RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RALAP11233 206 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 PLA2G4AP47712 749 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 SLC6A11P48066 632 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 DGKEP52429 567 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 PMS1P54277 932 aaKnown RBP20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 RAD23BP54727 409 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CBWD6Q4V339 395 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 C2orf27AQ580R0 203 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CBWD3Q5JTY5 395 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CBWD5Q5RIA9 395 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 C11orf74Q86VG3 221 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 BBS7Q8IWZ6 715 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 SLC4A11Q8NBS3 891 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 TSTD1Q8NFU3 115 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 ARHGEF4Q9NR80 690 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 SEMA4GQ9NTN9 838 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CLIC5Q9NZA1 410 aa20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 CDV3Q9UKY7 258 aaKnown RBP20.09■□□□□ 0.81
CCDC28A-203ENST00000617445 SCAMP3O14828 347 aaKnown RBP20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 TBX18O95935 607 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 RARGP13631 454 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 TBXAS1P24557 533 aaPredicted RBP20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 HOXC13P31276 330 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 PGFP49763 221 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 ETFBKMTQ8IXQ9 262 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 ARHGAP18Q8N392 663 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 ANKRD52Q8NB46 1076 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 ERCC4Q92889 916 aaPredicted RBP20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 TATDN2Q93075 761 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 SLC35C1Q96A29 364 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 JAKMIP2Q96AA8 810 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 RTKNQ9BST9 563 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 OSER1Q9NX31 292 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 WDR35Q9P2L0 1181 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 DEC1Q9P2X7 70 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 KIAA1257Q9ULG3 409 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 PCDHGA5Q9Y5G8 931 aa20.08■□□□□ 0.81
CCDC28A-203ENST00000617445 A0A1W2PQH9 124 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 ALDH1A2O94788 518 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 RHOBTB1O94844 696 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 SEC13P55735 322 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 CETN1Q12798 172 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 CUL2Q13617 745 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 CRY1Q16526 586 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 EOGTQ5NDL2 527 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 C10orf120Q5SQS8 335 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 PRR23CQ6ZRP0 262 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 NETO1Q8TDF5 533 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 POLR3BQ9NW08 1133 aaPredicted RBP20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 NAGPAQ9UK23 515 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 MAN1B1Q9UKM7 699 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 CIZ1Q9ULV3 898 aaPredicted RBP20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 ZNF510Q9Y2H8 683 aa20.07■□□□□ 0.8
CCDC28A-203ENST00000617445 BICDL2A1A5D9 508 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 TRIM49BA6NDI0 452 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 TBC1D3BA6NDS4 549 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 GREM1O60565 184 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 EPN2O95208 641 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 IRF1P10914 325 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 KIR2DL1P43626 348 aaPredicted RBP20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 COG7P83436 770 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 ELF2Q15723 593 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 ANO4Q32M45 955 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 USP39Q53GS9 565 aaKnown RBP20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 TRMT11Q7Z4G4 463 aaKnown RBP20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 KBTBD6Q86V97 674 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 RASSF3Q86WH2 238 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 C12orf40Q86WS4 652 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 TMEM25Q86YD3 366 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 PHTF2Q8N3S3 785 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 CNOT6LQ96LI5 555 aaKnown RBP20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 XPO6Q96QU8 1125 aaKnown RBP20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 ARID3AQ99856 593 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 NMUR1Q9HB89 426 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 MARK1Q9P0L2 795 aa20.06■□□□□ 0.8
CCDC28A-203ENST00000617445 SPTBN2O15020 2390 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 P4HA2O15460 535 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 TULP3O75386 442 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 FMO5P49326 533 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 ATXN1P54253 815 aaKnown RBP20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 PLK5Q496M5 336 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 SGO2Q562F6 1265 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 RAB41Q5JT25 222 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 SCD5Q86SK9 330 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 CCDC33Q8N5R6 958 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 IL17RCQ8NAC3 791 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 DCLK3Q9C098 648 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 POLMQ9NP87 494 aaPredicted RBP20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 HESX1Q9UBX0 185 aa20.05■□□□□ 0.8
CCDC28A-203ENST00000617445 GNA14O95837 355 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 ZNF806P0C7X5 589 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 TIE1P35590 1138 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 BCAT1P54687 386 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 CCDC40Q4G0X9 1142 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 PM20D1Q6GTS8 502 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 PIGZQ86VD9 579 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 ABCA7Q8IZY2 2146 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 ALLCQ8N6M5 410 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 TXNDC5Q8NBS9 432 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms