RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PDGFRB	P09619	1106 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	WAS	P42768	502 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	ABCG1	P45844	678 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	GOLGA8F	Q08AF8	430 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	KCNA1	Q09470	495 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	GOLGA8DP	Q0D2H9	430 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	STARD3	Q14849	445 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	E2F5	Q15329	346 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	DUOXA2	Q1HG44	320 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	DBX2	Q6ZNG2	339 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	SYCP3	Q8IZU3	236 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	LSM14A	Q8ND56	463 aa	Known RBP	13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	MMS19	Q96T76	1030 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	PCED1A	Q9H1Q7	454 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	GAREM1	Q9H706	876 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	COMMD8	Q9NX08	183 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	WDR35	Q9P2L0	1181 aa		13.18	□□□□□ -0.3
CAPN1-223	ENST00000533079	PTPRJ	Q12913	1337 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	FAM92A	A1XBS5	289 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	NEDD8-MDP1	E9PL57	170 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	TULP1	O00294	542 aa	Predicted RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	CILP	O75339	1184 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	NCAM1	P13591	858 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	OXTR	P30559	389 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	GNL1	P36915	607 aa	Predicted RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	IFRD2	Q12894	506 aa	Predicted RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	SUZ12	Q15022	739 aa	Known RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	HTR3D	Q70Z44	454 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	DYM	Q7RTS9	669 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	TMEM25	Q86YD3	366 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZCCHC9	Q8N567	271 aa	Known RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	PDCD7	Q8N8D1	485 aa	Known RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	B3GALNT2	Q8NCR0	500 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZSWIM2	Q8NEG5	633 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	CBWD1	Q9BRT8	395 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZNF518B	Q9C0D4	1074 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	NACA2	Q9H009	215 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	KIAA1586	Q9HCI6	787 aa		13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	WSB2	Q9NYS7	404 aa	Predicted RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	LSM7	Q9UK45	103 aa	Known RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.17	□□□□□ -0.3
CAPN1-223	ENST00000533079	KALRN	O60229	2985 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	GOLGA8IP	A6NC78	632 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZNF233	A6NK53	670 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	GOLGA8J	A6NMD2	632 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079		H3BQV1	296 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	BCAT2	O15382	392 aa	Predicted RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	PRPF6	O94906	941 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	STAU1	O95793	577 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	IGLV3-19	P01714	112 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	ZDHHC11B	P0C7U3	371 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	TYR	P14679	529 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	PTPN1	P18031	435 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	DGKG	P49619	791 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	SLC5A3	P53794	718 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	CACNA2D1	P54289	1103 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	TNNC1	P63316	161 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	CAMK2B	Q13554	666 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	SMAD1	Q15797	465 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	SCARA3	Q6AZY7	606 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	OR5B17	Q8NGF7	314 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	OR6B3	Q8NGW1	331 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	NOC3L	Q8WTT2	800 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	TOE1	Q96GM8	510 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	ACOX2	Q99424	681 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	MRPL45	Q9BRJ2	306 aa	Known RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	BBS2	Q9BXC9	721 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	CCSER2	Q9H7U1	834 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	PRDM16	Q9HAZ2	1276 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	CD93	Q9NPY3	652 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	TMEM30A	Q9NV96	361 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	IL37	Q9NZH6	218 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	CCDC39	Q9UFE4	941 aa		13.16	□□□□□ -0.3
CAPN1-223	ENST00000533079	FRMD3	A2A2Y4	597 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	TRABD2B	A6NFA1	517 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	PRRT4	C9JH25	899 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	TRIM24	O15164	1050 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	TLR5	O60602	858 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	MAOB	P27338	520 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	CASP5	P51878	434 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	CYP4F3	Q08477	520 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	HLA-B	Q31612	363 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	INAVA	Q3KP66	663 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	FUT11	Q495W5	492 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	DCAF12L1	Q5VU92	463 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	STXBP4	Q6ZWJ1	553 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	RHBDD1	Q8TEB9	315 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	DNAJC19	Q96DA6	116 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	SMARCD1	Q96GM5	515 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	FAM84A	Q96KN4	292 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	IL21R	Q9HBE5	538 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	ITM2C	Q9NQX7	267 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	RAD54B	Q9Y620	910 aa		13.15	□□□□□ -0.3
CAPN1-223	ENST00000533079	METTL12	A8MUP2	240 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079		A8MXQ7	604 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	ATXN7	O15265	892 aa	Predicted RBP	13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms