RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CPQQ9Y646 472 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 USP3Q9Y6I4 520 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 PIAS3Q9Y6X2 628 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 FANCMQ8IYD8 2048 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 ATG2BQ96BY7 2078 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 KRBA1A5PL33 1030 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 RNF225M0QZC1 329 aaPredicted RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 NCAM2O15394 837 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 SART1O43290 800 aaKnown RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 COCHO43405 550 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 UCHL3P15374 230 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 AOC1P19801 751 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 ATP5C1P36542 298 aaKnown RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 KPNA1P52294 538 aaPredicted RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 STARD6P59095 220 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 UBXN1Q04323 297 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 ITPRIPL2Q3MIP1 535 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 KLHDC7AQ5VTJ3 777 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 CWF19L1Q69YN2 538 aaKnown RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 KLHDC10Q6PID8 442 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 ZNF852Q6ZMS4 543 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 GPIHBP1Q8IV16 184 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 DHX40Q8IX18 779 aaKnown RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 CPA6Q8N4T0 437 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 UBA3Q8TBC4 463 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 OSCP1Q8WVF1 389 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 SECISBP2LQ93073 1101 aaKnown RBP13.66□□□□□ -0.22
CLK3-224ENST00000568605 ATP2A3Q93084 1043 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 HSFY1Q96LI6 401 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 NOX5Q96PH1 765 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 CYP2S1Q96SQ9 504 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 NELL2Q99435 816 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 PRRX2Q99811 253 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 CCSER2Q9H7U1 834 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 CNGB3Q9NQW8 809 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 FHOD1Q9Y613 1164 aa13.66□□□□□ -0.22
CLK3-224ENST00000568605 A0A1W2PQH9 124 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 KANSL1LA0AUZ9 987 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 GOLGA6L19H0YKK7 550 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 LEFTY2O00292 366 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ARNTLO00327 626 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 FBXO21O94952 628 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 NFATC1O95644 943 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ZBED1O96006 694 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 PDGFBP01127 241 aaPredicted RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 ACADSBP45954 432 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 NUBP1P53384 320 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 YWHAGP61981 247 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLK3-224ENST00000568605 APBA1Q02410 837 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 KCNMA1Q12791 1236 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 DRAP1Q14919 205 aaPredicted RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 PKDCCQ504Y2 493 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 C10orf120Q5SQS8 335 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 RSRC2Q7L4I2 434 aaKnown RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 RALGPS2Q86X27 583 aaPredicted RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 SCML4Q8N228 414 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ZNF276Q8N554 614 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 PJA1Q8NG27 643 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 NEK11Q8NG66 645 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ZNF606Q8WXB4 792 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ZFYVE19Q96K21 471 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 SPAG5Q96R06 1193 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 TRIM62Q9BVG3 475 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ULBP1Q9BZM6 244 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 KCNH6Q9H252 994 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 ST7Q9NRC1 585 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 FAM207AQ9NSI2 230 aaPredicted RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 OLA1Q9NTK5 396 aaKnown RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLK3-224ENST00000568605 DUS2Q9NX74 493 aaKnown RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 SMPD4Q9NXE4 827 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 TBC1D14Q9P2M4 693 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 DNMT3LQ9UJW3 386 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 LSM7Q9UK45 103 aaKnown RBP13.65□□□□□ -0.22
CLK3-224ENST00000568605 SH3BP1Q9Y3L3 701 aa13.65□□□□□ -0.22
CLK3-224ENST00000568605 F8VZ95 297 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 RARGP13631 454 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 ATP1A3P13637 1013 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 LCP1P13796 627 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 KRT9P35527 623 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 MAGEA9P43362 315 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 SNX16P57768 344 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 NR1H3Q13133 447 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 RUNX3Q13761 415 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 UBXN2BQ14CS0 331 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 SYCP1Q15431 976 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 BTBD8Q5XKL5 378 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 FMNL3Q8IVF7 1028 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 FAM71AQ8IYT1 594 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 STK32AQ8WU08 396 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 SLC35F5Q8WV83 523 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 IRGQQ8WZA9 623 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 OTUB2Q96DC9 234 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 ERGIC2Q96RQ1 377 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 FAM83CQ9BQN1 747 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 DDX23Q9BUQ8 820 aaKnown RBP13.64□□□□□ -0.23
CLK3-224ENST00000568605 STK33Q9BYT3 514 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 OSBPL6Q9BZF3 934 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 RNF38Q9H0F5 515 aa13.64□□□□□ -0.23
CLK3-224ENST00000568605 HSD3B7Q9H2F3 369 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms