RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 FUKQ8N0W3 1084 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 KCTD13Q8WZ19 329 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 APBB2Q92870 758 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 TRIM43Q96BQ3 446 aaPredicted RBP17.6■□□□□ 0.41
LDLR-206ENST00000557958 ZBTB9Q96C00 473 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 PSD3Q9NYI0 1048 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 ANAPC5Q9UJX4 755 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 DNPEPQ9ULA0 475 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 UPP2O95045 317 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 RARGP13631 454 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 IGFBP6P24592 240 aaPredicted RBP17.59■□□□□ 0.41
LDLR-206ENST00000557958 CDH6P55285 790 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 C15orf59Q2T9L4 293 aaPredicted RBP17.59■□□□□ 0.41
LDLR-206ENST00000557958 MDH1BQ5I0G3 518 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 FAM43BQ6ZT52 329 aaPredicted RBP17.59■□□□□ 0.41
LDLR-206ENST00000557958 ALLCQ8N6M5 410 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 LPIN3Q9BQK8 851 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 FOXP3Q9BZS1 431 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 LRRC4Q9HBW1 653 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 NEU2Q9Y3R4 380 aa17.59■□□□□ 0.41
LDLR-206ENST00000557958 KIAA0100Q14667 2235 aaKnown RBP17.59■□□□□ 0.41
LDLR-206ENST00000557958 HMGB1P1B2RPK0 211 aaPredicted RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 APOC4-APOC2K7ER74 178 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 MDM4O15151 490 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 FBXO21O94952 628 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 PARNO95453 639 aaKnown RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 APOC2P02655 101 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 ACAT1P24752 427 aaKnown RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 ITGB8P26012 769 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 TKTP29401 623 aaKnown RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 FAM189BP81408 668 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 RNASELQ05823 741 aaKnown RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 ADCY2Q08462 1091 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 PAN2Q504Q3 1202 aaKnown RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 TRNP1Q6NT89 227 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 SCYL2Q6P3W7 929 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 PIGZQ86VD9 579 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 HOOK3Q86VS8 718 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 ABI1Q8IZP0 508 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 SIX6OS1Q8N1H7 587 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.58■□□□□ 0.41
LDLR-206ENST00000557958 PAAF1Q9BRP4 392 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 B3GNT5Q9BYG0 378 aa17.58■□□□□ 0.41
LDLR-206ENST00000557958 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.58■□□□□ 0.416e-8■□□□□ 8.2
LDLR-206ENST00000557958 ZNF487B1APH4 448 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 INPPL1O15357 1258 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 B3GAT3O94766 335 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 NUDT17P0C025 328 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 TRIP13Q15645 432 aaPredicted RBP17.58■□□□□ 0.4
LDLR-206ENST00000557958 OASLQ15646 514 aaKnown RBP17.58■□□□□ 0.4
LDLR-206ENST00000557958 CLLU1OSQ5K130 101 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 TRMT10CQ7L0Y3 403 aaKnown RBP17.58■□□□□ 0.4
LDLR-206ENST00000557958 SLC35B2Q8TB61 432 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 URGCPQ8TCY9 931 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 HASPINQ8TF76 798 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 FAM118BQ9BPY3 351 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 KRT82Q9NSB4 513 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 TMEM161AQ9NX61 479 aa17.58■□□□□ 0.4
LDLR-206ENST00000557958 H0YGN5 161 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 MCF2LO15068 1137 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ATP2C2O75185 946 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ENDOD1O94919 500 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 TIMP1P01033 207 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 CXCL10P02778 98 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 CSF2RAP15509 400 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 IVDP26440 423 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 KLRC2P26717 231 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 GATMP50440 423 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ITGA8P53708 1063 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 DYNLT1P63172 113 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ADIGQ0VDE8 80 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 IKBKEQ14164 716 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 TAF5Q15542 800 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 NOMO2Q5JPE7 1267 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 C3orf58Q8NDZ4 430 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 MYCBPAPQ8TBZ2 947 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ACTL9Q8TC94 416 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 KHSRPQ92945 711 aaKnown RBP eCLIP17.57■□□□□ 0.4
LDLR-206ENST00000557958 FAM193BQ96PV7 902 aaPredicted RBP17.57■□□□□ 0.4
LDLR-206ENST00000557958 PEBP4Q96S96 227 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 DDX23Q9BUQ8 820 aaKnown RBP17.57■□□□□ 0.4
LDLR-206ENST00000557958 PCDH9Q9HC56 1237 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 NFS1Q9Y697 457 aa17.57■□□□□ 0.4
LDLR-206ENST00000557958 ERICH4A6NGS2 130 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 A6NNZ2 444 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 SGK1O00141 431 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 GABBR2O75899 941 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 CYP11A1P05108 521 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 MATKP42679 507 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 VPS41P49754 854 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 GYS2P54840 703 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 OTUD4Q01804 1114 aaKnown RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 ZNF844Q08AG5 666 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 KCTD19Q17RG1 926 aaPredicted RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 TUBB8Q3ZCM7 444 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 SH3PXD2AQ5TCZ1 1133 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 IZUMO3Q5VZ72 239 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.56■□□□□ 0.4
LDLR-206ENST00000557958 CLEC20AQ6ZU45 233 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 STRADAQ7RTN6 431 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms