RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 SLC4A5Q9BY07 1137 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 SLC46A2Q9BY10 475 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 OSBPL6Q9BZF3 934 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 HBS1LQ9Y450 684 aaKnown RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 FOXN3O00409 490 aaPredicted RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 NCAM2O15394 837 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CYP26A1O43174 497 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 FCARP24071 287 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 NNTQ13423 1086 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CCDC142Q17RM4 750 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 DPY19L2P1Q6NXN4 242 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 TMEM150AQ86TG1 271 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 VPS36Q86VN1 386 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 GPR152Q8TDT2 470 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 TFAP2BQ92481 460 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 WDR35Q9P2L0 1181 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CDH22Q9UJ99 828 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 SH3BP1Q9Y3L3 701 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 HELZP42694 1942 aaKnown RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 MYO16Q9Y6X6 1858 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 ATP1A3P13637 1013 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 DESP17661 470 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 IFRD2Q12894 506 aaPredicted RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 MSANTD2Q6P1R3 559 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 PARM1Q6UWI2 310 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 SUGP1Q8IWZ8 645 aaKnown RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 PLD4Q96BZ4 506 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 NECAB3Q96P71 396 aaPredicted RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 DDX50Q9BQ39 737 aaKnown RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 MUTYHQ9UIF7 546 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 NAGPAQ9UK23 515 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 GFPT2O94808 682 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CYP11B1P15538 503 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CACNA2D1P54289 1103 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 YWHAGP61981 247 aaKnown RBP eCLIP11.24□□□□□ -0.61
UBR4-208ENST00000459947 USP46P62068 366 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 CDR2Q01850 454 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 ACBD5Q5T8D3 534 aaPredicted RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 RSRC2Q7L4I2 434 aaKnown RBP11.24□□□□□ -0.61
UBR4-208ENST00000459947 ATP2A3Q93084 1043 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 KXD1Q9BQD3 176 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 ULBP1Q9BZM6 244 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 SYNCQ9H7C4 482 aa11.24□□□□□ -0.61
UBR4-208ENST00000459947 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.24□□□□□ -0.616e-7■□□□□ 8.3
UBR4-208ENST00000459947 TLR5O60602 858 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 GPR37L1O60883 481 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 ABL1P00519 1130 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 RARGP13631 454 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 GPD2P43304 727 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 DAOAP59103 153 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 ASIC2Q16515 512 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 TSR1Q2NL82 804 aaKnown RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 TANGO2Q6ICL3 276 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 GJB7Q6PEY0 223 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 KCNH6Q9H252 994 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 KIF26AQ9ULI4 1882 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 RNF225M0QZC1 329 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 SP100P23497 879 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 ADIGQ0VDE8 80 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 MTF1Q14872 753 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 ZNF77Q15935 545 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 TMEM31Q5JXX7 168 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 TXNDC8Q6A555 127 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 TMEM110Q86TL2 294 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 ZNF557Q8N988 423 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 UBA3Q8TBC4 463 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 PAXBP1Q9Y5B6 917 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 ZNF638Q14966 1978 aaKnown RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 TMEM221A6NGB7 291 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 M0R296 226 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 CLCN1P35523 988 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 MLF2Q15773 248 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 SFMBT2Q5VUG0 894 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 VITQ6UXI7 678 aa11.23□□□□□ -0.61
UBR4-208ENST00000459947 USP13Q92995 863 aaPredicted RBP11.23□□□□□ -0.61
UBR4-208ENST00000459947 PRR33A8MZF0 331 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 BEST1O76090 585 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 LTFP02788 710 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 GJA1P17302 382 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 GDI1P31150 447 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 PDCLQ13371 301 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 ITPRIPL2Q3MIP1 535 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 RALGPS2Q86X27 583 aaPredicted RBP11.22□□□□□ -0.61
UBR4-208ENST00000459947 ARL14EPQ8N8R7 260 aaPredicted RBP11.22□□□□□ -0.61
UBR4-208ENST00000459947 OSCP1Q8WVF1 389 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 FGF14Q92915 247 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 MFSD1Q9H3U5 465 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 NLRC4Q9NPP4 1024 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 ARHGEF3Q9NR81 526 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 TMEM30AQ9NV96 361 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.22□□□□□ -0.61
UBR4-208ENST00000459947 CALB1P05937 261 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 GBP1P32455 592 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 LRRC32Q14392 662 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 C10orf120Q5SQS8 335 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 DENND1BQ6P3S1 775 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 SCAMP5Q8TAC9 235 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 SH3RF2Q8TEC5 729 aa11.22□□□□□ -0.61
UBR4-208ENST00000459947 TRIM11Q96F44 468 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms