RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SUN1O94901 812 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 DHRS4L1P0CG22 281 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 PPP3CBP16298 524 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 FGFR2P21802 821 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 BDNFP23560 247 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 CTGFP29279 349 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 PDIA3P30101 505 aaKnown RBP4.81□□□□□ -1.64
VPS29-202ENST00000447578 RPS16P62249 146 aaKnown RBP4.81□□□□□ -1.64
VPS29-202ENST00000447578 PTPRRQ15256 657 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 SRSF7Q16629 238 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS29-202ENST00000447578 ATP2B3Q16720 1220 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 PFKFB4Q16877 469 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 SLC35G1Q2M3R5 365 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 NBPF8Q3BBV2 869 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ZACNQ401N2 412 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ZNF783Q6ZMS7 281 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 BEND5Q7L4P6 421 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 FAM90A1Q86YD7 464 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 RASAL3Q86YV0 1011 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ADGRG5Q8IZF4 528 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ZNF366Q8N895 744 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ATG16L2Q8NAA4 619 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 NMD3Q96D46 503 aaKnown RBP4.81□□□□□ -1.64
VPS29-202ENST00000447578 IQCDQ96DY2 449 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 EIF2AK1Q9BQI3 630 aaKnown RBP4.81□□□□□ -1.64
VPS29-202ENST00000447578 C1orf43Q9BWL3 253 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 TRIM54Q9BYV2 358 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 SLAMF7Q9NQ25 335 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 RRN3Q9NYV6 651 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 LRFN1Q9P244 771 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 SWAP70Q9UH65 585 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 PGAP2Q9UHJ9 254 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 KIF14Q15058 1648 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ABCA8O94911 1581 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 PTPRGP23470 1445 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 NCOA1Q15788 1441 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 GOLGA6L3A6NEY3 463 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 HNRNPDLO14979 420 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 THAP12O43422 761 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PRKCGP05129 697 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PYGLP06737 847 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 ANXA2P07355 339 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 MAN1A1P33908 653 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 DDIT3P35638 169 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PHKA1P46020 1223 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PIK3CGP48736 1102 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 ARFIP2P53365 341 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 EXOSC9Q06265 439 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 ZNF844Q08AG5 666 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 SLC13A2Q13183 592 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 SLC44A4Q53GD3 710 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 FCRLBQ6BAA4 426 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 RNF44Q7L0R7 432 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PCGF5Q86SE9 256 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 NME8Q8N427 588 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 Q8N9P0 234 aaPredicted RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 C9orf106Q8NAJ2 232 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 TRAPPC12Q8WVT3 735 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PGBD1Q96JS3 809 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 SNX22Q96L94 193 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 HAPLN3Q96S86 360 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 OBP2BQ9NPH6 170 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 ITM2CQ9NQX7 267 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 SIDT1Q9NXL6 827 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 GRHPRQ9UBQ7 328 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 SLC39A10Q9ULF5 831 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 MAN2B2Q9Y2E5 1009 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 LRRFIP2Q9Y608 721 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 WNT6Q9Y6F9 365 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 ADGRL2O95490 1459 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 PZPP20742 1482 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 RPRD2Q5VT52 1461 aaKnown RBP4.8□□□□□ -1.64
VPS29-202ENST00000447578 ITSN2Q9NZM3 1697 aa4.8□□□□□ -1.64
VPS29-202ENST00000447578 ADCY10Q96PN6 1610 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TRIM43BA6NCK2 446 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TOR1BO14657 336 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 EPB41L2O43491 1005 aaKnown RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 MT-ND5P03915 603 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 CD1AP06126 327 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 GNAI3P08754 354 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TSPY4P0CV99 314 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TSPY10P0CW01 314 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 MTHFD1P11586 935 aaKnown RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 MYL4P12829 197 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 ITGA8P53708 1063 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 GNAI1P63096 354 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 HTRA4P83105 476 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 TFF2Q03403 129 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 GALNT1Q10472 559 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 TBX2Q13207 712 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 PRKG1Q13976 671 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 HABP2Q14520 560 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 PREPLQ4J6C6 727 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 TMEM119Q4V9L6 283 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 PABPC1LQ4VXU2 614 aaKnown RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 EMC10Q5UCC4 262 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 CACNA2D3Q8IZS8 1091 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 CFAP52Q8N1V2 620 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 SDR16C5Q8N3Y7 309 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 PCSK9Q8NBP7 692 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms