RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 VITQ6UXI7 678 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 SERAC1Q96JX3 654 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 CNDP1Q96KN2 507 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RHOXF2Q9BQY4 288 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 VCXQ9H320 206 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 DIS3Q9Y2L1 958 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 PDS5AQ29RF7 1337 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 SALL1Q9NSC2 1324 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ARHGAP23Q9P227 1491 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 MSH4O15457 936 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TREHO43280 583 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 FGF18O76093 207 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TAL1P17542 331 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RPL9P32969 192 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TAS2R50P59544 299 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TIGD7Q6NT04 549 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 PHYKPLQ8IUZ5 450 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RHBDD1Q8TEB9 315 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 VCX3BQ9H321 246 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ARFGAP3Q9NP61 516 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 SMARCB1Q12824 385 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TRIP13Q15645 432 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 E2F4Q16254 413 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RABL6Q3YEC7 729 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 PDIK1LQ8N165 341 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 C1orf131Q8NDD1 294 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 LPCAT1Q8NF37 534 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 FEM1CQ96JP0 617 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 SALL3Q9BXA9 1300 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 IQGAP3Q86VI3 1631 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 KPNA7A9QM74 516 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RAMP2O60895 175 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 MAT2AP31153 395 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 LRRC74AQ0VAA2 488 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TFDP3Q5H9I0 405 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 MIIPQ5JXC2 388 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 KCNT2Q6UVM3 1135 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TFAP2DQ7Z6R9 452 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 NT5DC3Q86UY8 548 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 C11orf74Q86VG3 221 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RNPEPQ9H4A4 650 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TEKT2Q9UIF3 430 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 CDH7Q9ULB5 785 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 BARX2Q9UMQ3 279 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ORC6Q9Y5N6 252 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 VSTM5A8MXK1 200 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 GPC1P35052 558 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ANKRD20A3Q5VUR7 823 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 C11orf57Q6ZUT1 292 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 CHST9Q7L1S5 443 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 KRT78Q8N1N4 520 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 MTMR8Q96EF0 704 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 NELL2Q99435 816 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 BRD8Q9H0E9 1235 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 DPH5Q9H2P9 285 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 TRIT1Q9H3H1 467 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 GPRC5CQ9NQ84 441 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 PHPT1Q9NRX4 125 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 NMRK1Q9NWW6 199 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ADAM28Q9UKQ2 775 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 VPS9D1Q9Y2B5 631 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 VPS4BO75351 444 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ALDH18A1P54886 795 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 SPATA1Q5VX52 437 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 SIPA1Q96FS4 1042 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ARHGAP39Q9C0H5 1083 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ALG6Q9Y672 507 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 NWD1Q149M9 1564 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ZNF853P0CG23 659 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 GRK2P25098 689 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 EEF1GP26641 437 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 MASP1P48740 699 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 CEP85LQ5SZL2 805 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 LGMNQ99538 433 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 REEP2Q9BRK0 252 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 CLPBQ9H078 707 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 LSG1Q9H089 658 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 HCN3Q9P1Z3 774 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ZMYM5Q9UJ78 669 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 PPRC1Q5VV67 1664 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 GRM6O15303 877 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ZRANB2O95218 330 aaKnown RBP eCLIP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ECEL1O95672 775 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 TIMP1P01033 207 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 SLFN14P0C7P3 912 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 GPD1P21695 349 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ZNF618Q5T7W0 954 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 HID1Q8IV36 788 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ANKRD42Q8N9B4 389 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 PPP1R14AQ96A00 147 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 RNF25Q96BH1 459 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 PRRX2Q99811 253 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 ARHGEF38Q9NXL2 777 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 BCAP29Q9UHQ4 241 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 OPHN1O60890 802 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 RARGP13631 454 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 CDC27P30260 824 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 RWDD2BP57060 319 aa9.54□□□□□ -0.88
LIMCH1-202ENST00000381753 TMPRSS15P98073 1019 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms