RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-206ENST00000360019 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-206ENST00000360019 V9GYY5 206 aaPredicted RBP19.48■□□□□ 0.71
CLN3-206ENST00000360019 UQCRHLA0A096LP55 91 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 PGRMC1O00264 195 aaKnown RBP19.47■□□□□ 0.71
CLN3-206ENST00000360019 SART1O43290 800 aaKnown RBP19.47■□□□□ 0.71
CLN3-206ENST00000360019 FGGP02679 453 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 UQCRHP07919 91 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 DNAJB2P25686 324 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 DUSP4Q13115 394 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 NAA30Q147X3 362 aaPredicted RBP19.47■□□□□ 0.71
CLN3-206ENST00000360019 MGAT5BQ3V5L5 792 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 IRGQQ8WZA9 623 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 SEPT5Q99719 369 aaPredicted RBP19.47■□□□□ 0.71
CLN3-206ENST00000360019 NGRNQ9NPE2 291 aaKnown RBP19.47■□□□□ 0.71
CLN3-206ENST00000360019 KLHL11Q9NVR0 708 aa19.47■□□□□ 0.71
CLN3-206ENST00000360019 EFCAB8A8MWE9 144 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 HAPLN1P10915 354 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 HDAC4P56524 1084 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 KRT17Q04695 432 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 C2orf54Q08AI8 447 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 IFRD2Q12894 506 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 DCAF6Q58WW2 860 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 OTUD1Q5VV17 481 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 SYPL2Q5VXT5 272 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 CYP4V2Q6ZWL3 525 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 RSRC2Q7L4I2 434 aaKnown RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 POLNQ7Z5Q5 900 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 NOA1Q8NC60 698 aaKnown RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 CENPIQ92674 756 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 ACSF2Q96CM8 615 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 PEBP4Q96S96 227 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 ZBP1Q9H171 429 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 CALCOCO1Q9P1Z2 691 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 PCSK1NQ9UHG2 260 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 USP18Q9UMW8 372 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 COL4A4P53420 1690 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 LTFP02788 710 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 NOS2P35228 1153 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 MAGEA10P43363 369 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 PITX1P78337 314 aaPredicted RBP19.46■□□□□ 0.71
CLN3-206ENST00000360019 ITIH3Q06033 890 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 SMTNL2Q2TAL5 461 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 KCNT1Q5JUK3 1230 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 SEL1L2Q5TEA6 688 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 NUP93Q8N1F7 819 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 GPR152Q8TDT2 470 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 NT5C3BQ969T7 300 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 RPGRIP1Q96KN7 1286 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 TBCBQ99426 244 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 ZWILCHQ9H900 591 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 NAALADL1Q9UQQ1 740 aa19.46■□□□□ 0.71
CLN3-206ENST00000360019 LINC01553A4QN01 128 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 LILRB3O75022 631 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 ABLIM3O94929 683 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 TRUB2O95900 331 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 ATXN1P54253 815 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 USP46P62068 366 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 HADHQ16836 314 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 SLC25A52Q3SY17 297 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 FAM109BQ6ICB4 259 aaPredicted RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 BNIPLQ7Z465 357 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 ANKS1BQ7Z6G8 1248 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 EXD1Q8NHP7 514 aa19.45■□□□□ 0.7
CLN3-206ENST00000360019 MRPL17Q9NRX2 175 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 RBM12Q9NTZ6 932 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 AFF4Q9UHB7 1163 aaKnown RBP19.45■□□□□ 0.7
CLN3-206ENST00000360019 GRXCR1A8MXD5 290 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ARHGEF15O94989 841 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 KRT7P08729 469 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 MYOGP15173 224 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ATF6P18850 670 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 BMPR1AP36894 532 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 PGFP49763 221 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 SHHQ15465 462 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 LONRF2Q1L5Z9 754 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 STRADAQ7RTN6 431 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ZNF461Q8TAF7 563 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 TSC1Q92574 1164 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 GOLGA1Q92805 767 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 NPY6RQ99463 290 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 AP1M1Q9BXS5 423 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 STK39Q9UEW8 545 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 PLXNA4Q9HCM2 1894 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 PI4K2BG5E9Z4 385 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ZRANB2O95218 330 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLN3-206ENST00000360019 SEC24AO95486 1093 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 KRT1P04264 644 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 CTSAP10619 480 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 CTNNB1P35222 781 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 SULT1E1P49888 294 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 RAB33AQ14088 237 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 LLGL1Q15334 1064 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ERCC6LQ2NKX8 1250 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 TEX35Q5T0J7 233 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 BSPRYQ5W0U4 402 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 DENND5BQ6ZUT9 1274 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 SPRED2Q7Z698 418 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 GPR65Q8IYL9 337 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 ZDHHC14Q8IZN3 488 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms