RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MYH11P35749 1972 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ACSL4O60488 711 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 EFR3AQ14156 821 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 Q96MT0 163 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 PPIEQ9UNP9 301 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 UTYO14607 1347 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 PTPN21Q16825 1174 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 EFHC1Q5JVL4 640 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 TBCDQ9BTW9 1192 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF232Q9UNY5 417 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC25A41Q8N5S1 370 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 LRRC17Q8N6Y2 441 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 NAT9Q9BTE0 207 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ADGRE3Q9BY15 652 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 KCTD10Q9H3F6 313 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 AAASQ9NRG9 546 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 PDGFRAP16234 1089 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 MAGEA4P43358 317 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 AGMOQ6ZNB7 445 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ARMCX6Q7L4S7 300 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SNX12Q9UMY4 172 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SUPT7LO94864 414 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 BST2Q10589 180 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 DNAJC10Q8IXB1 793 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 TMEM132CQ8N3T6 1108 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 NFKBIZQ9BYH8 718 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ASAP1Q9ULH1 1129 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 NR5A2O00482 541 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 IRF1P10914 325 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 GSTM5P46439 218 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC35G2Q8TBE7 412 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 PROX1Q92786 737 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 GPRASP2Q96D09 838 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM120BQ96EK7 910 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 EDC3Q96F86 508 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 MAGEB18Q96M61 343 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 KIAA0586Q9BVV6 1533 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 TNNI3P19429 210 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SPIRE1Q08AE8 756 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ATP6V0D2Q8N8Y2 350 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC40A1Q9NP59 571 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 PRAG1Q86YV5 1406 aa14.35□□□□□ -0.11
CCDC88A-201ENST00000263630 ALDH3A2P51648 485 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ERO1BQ86YB8 467 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CLHC1Q8NHS4 586 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 HPS3Q969F9 1004 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 PHF20L1A8MW92 1017 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RARBP10826 455 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CDC25AP30304 524 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 IER5Q5VY09 327 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 BRINP3Q76B58 766 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 OR52L1Q8NGH7 329 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 MYLPFQ96A32 169 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 LXNQ9BS40 222 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ADPRHL2Q9NX46 363 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 COL17A1Q9UMD9 1497 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CDK8P49336 464 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 MCCD1P59942 119 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CHID1Q9BWS9 393 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 MLH3Q9UHC1 1453 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CYP7B1O75881 506 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 PRKAR1AP10644 381 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF677Q86XU0 584 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 KIF2BQ8N4N8 673 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CHCHD6Q9BRQ6 235 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 TLR7Q9NYK1 1049 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 PIN4Q9Y237 131 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ADCY6O43306 1168 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CPSF4O95639 269 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 XRCC4Q13426 336 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM20CQ8IXL6 584 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 C9orf16Q9BUW7 83 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 GABBR1Q9UBS5 961 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 NCK2O43639 380 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 CRTAMO95727 393 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 UMPSP11172 480 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 APOBEC3FQ8IUX4 373 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RASSF1Q9NS23 344 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 APEX2Q9UBZ4 518 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM50BQ9Y247 325 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 DRG1Q9Y295 367 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RAPGEF6Q8TEU7 1601 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 LOC100653049A0A140TA62 436 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 AP1S3Q96PC3 154 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ELOVL6Q9H5J4 265 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RUVBL2Q9Y230 463 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ADGBQ8N7X0 1667 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RBP1P09455 135 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 ACADMP11310 421 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC11A2P49281 568 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 AMPD2Q01433 879 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 RGS21Q2M5E4 152 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 TDRD10Q5VZ19 366 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 USP33Q8TEY7 942 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 TPD52L3Q96J77 140 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 MYRFQ9Y2G1 1151 aa14.34□□□□□ -0.11
CCDC88A-201ENST00000263630 PRG2P13727 222 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 DDX39BQ13838 428 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 QPRTQ15274 297 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms