RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 HSP90B2PQ58FF3 399 aa15.2■□□□□ 0.02
TCF4-248ENST00000616053 H0YHG0 523 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 GNL3LQ9NVN8 582 aaKnown RBP15.19■□□□□ 0.02
TCF4-248ENST00000616053 SSR1P43307 286 aaKnown RBP15.19■□□□□ 0.02
TCF4-248ENST00000616053 MRPS9P82933 396 aaKnown RBP15.19■□□□□ 0.02
TCF4-248ENST00000616053 RGS22Q8NE09 1264 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 GOLGA6L3A6NEY3 463 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 ZNF76P36508 570 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 PODXL2Q9NZ53 605 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 PDILTQ8N807 584 aa15.19■□□□□ 0.02
TCF4-248ENST00000616053 ELL2O00472 640 aaPredicted RBP15.19■□□□□ 0.02
TCF4-248ENST00000616053 PDE3BQ13370 1112 aa15.18■□□□□ 0.02
TCF4-248ENST00000616053 SSX2IPQ9Y2D8 614 aa15.18■□□□□ 0.02
TCF4-248ENST00000616053 HSP90AA2PQ14568 343 aaPredicted RBP15.18■□□□□ 0.02
TCF4-248ENST00000616053 HMGB2P26583 209 aaKnown RBP15.18■□□□□ 0.02
TCF4-248ENST00000616053 AIMP1Q12904 312 aaKnown RBP15.18■□□□□ 0.02
TCF4-248ENST00000616053 ZNF771Q7L3S4 317 aaPredicted RBP15.17■□□□□ 0.02
TCF4-248ENST00000616053 EIF4G1Q04637 1599 aaKnown RBP15.17■□□□□ 0.02
TCF4-248ENST00000616053 BBXQ8WY36 941 aaPredicted RBP15.16■□□□□ 0.02
TCF4-248ENST00000616053 SCRIBQ14160 1630 aa15.16■□□□□ 0.02
TCF4-248ENST00000616053 STAMBPO95630 424 aa15.15■□□□□ 0.02
TCF4-248ENST00000616053 ATP2B1P20020 1258 aa15.15■□□□□ 0.02
TCF4-248ENST00000616053 EFCAB2Q5VUJ9 269 aa15.15■□□□□ 0.02
TCF4-248ENST00000616053 POTEJP0CG39 1038 aa15.14■□□□□ 0.01
TCF4-248ENST00000616053 MNS1Q8NEH6 495 aa15.14■□□□□ 0.01
TCF4-248ENST00000616053 NF2P35240 595 aa15.14■□□□□ 0.01
TCF4-248ENST00000616053 NOM1Q5C9Z4 860 aaKnown RBP15.14■□□□□ 0.01
TCF4-248ENST00000616053 ZNHIT6Q9NWK9 470 aaKnown RBP15.14■□□□□ 0.01
TCF4-248ENST00000616053 CYB5RLQ6IPT4 315 aa15.14■□□□□ 0.01
TCF4-248ENST00000616053 SASS6Q6UVJ0 657 aa15.14■□□□□ 0.01
TCF4-248ENST00000616053 EPB41L2O43491 1005 aaKnown RBP15.13■□□□□ 0.01
TCF4-248ENST00000616053 CCDC73Q6ZRK6 1079 aa15.13■□□□□ 0.01
TCF4-248ENST00000616053 TAX1BP1Q86VP1 789 aa15.13■□□□□ 0.01
TCF4-248ENST00000616053 BCCIPQ9P287 314 aaKnown RBP eCLIP15.13■□□□□ 0.01
TCF4-248ENST00000616053 CLASRPQ8N2M8 674 aaKnown RBP15.13■□□□□ 0.01
TCF4-248ENST00000616053 TANGO6Q9C0B7 1094 aa15.13■□□□□ 0.01
TCF4-248ENST00000616053 ROCK2O75116 1388 aaKnown RBP15.13■□□□□ 0.01
TCF4-248ENST00000616053 SOGA3Q5TF21 947 aa15.12■□□□□ 0.01
TCF4-248ENST00000616053 ANKRD45Q5TZF3 282 aa15.12■□□□□ 0.01
TCF4-248ENST00000616053 FEZ1Q99689 392 aa15.12■□□□□ 0.01
TCF4-248ENST00000616053 TNIP1Q15025 636 aa15.12■□□□□ 0.01
TCF4-248ENST00000616053 CNNM1Q9NRU3 951 aa15.11■□□□□ 0.01
TCF4-248ENST00000616053 BRPF1P55201 1214 aaPredicted RBP15.11■□□□□ 0.01
TCF4-248ENST00000616053 CLEC11AQ9Y240 323 aa15.11■□□□□ 0.01
TCF4-248ENST00000616053 BEGAINQ9BUH8 593 aa15.11■□□□□ 0.01
TCF4-248ENST00000616053 TSPYL1Q9H0U9 437 aa15.11■□□□□ 0.01
TCF4-248ENST00000616053 VPS37CA5D8V6 355 aaPredicted RBP15.11■□□□□ 0.01
TCF4-248ENST00000616053 BIRC2Q13490 618 aa15.1■□□□□ 0.01
TCF4-248ENST00000616053 CCDC146Q8IYE0 955 aa15.1■□□□□ 0.01
TCF4-248ENST00000616053 PUS7Q96PZ0 661 aaKnown RBP15.1■□□□□ 0.01
TCF4-248ENST00000616053 LUC7LQ9NQ29 371 aaKnown RBP15.1■□□□□ 0.01
TCF4-248ENST00000616053 PPM1EQ8WY54 764 aa15.1■□□□□ 0.01
TCF4-248ENST00000616053 GOLGA6L10A6NI86 522 aa15.1■□□□□ 0.01
TCF4-248ENST00000616053 ARGLU1Q9NWB6 273 aaPredicted RBP15.1■□□□□ 0.01
TCF4-248ENST00000616053 MIER1Q8N108 512 aa15.09■□□□□ 0.01
TCF4-248ENST00000616053 SMARCE1Q969G3 411 aa15.09■□□□□ 0.01
TCF4-248ENST00000616053 BIN2Q9UBW5 565 aaPredicted RBP15.09■□□□□ 0.01
TCF4-248ENST00000616053 CCDC180Q9P1Z9 1646 aa15.09■□□□□ 0.01
TCF4-248ENST00000616053 ERCC4Q92889 916 aaPredicted RBP15.09■□□□□ 0.01
TCF4-248ENST00000616053 SSBP05455 408 aaKnown RBP eCLIP15.09■□□□□ 0.01
TCF4-248ENST00000616053 FILIP1LQ4L180 1135 aa15.09■□□□□ 0.01
TCF4-248ENST00000616053 STK11IPQ8N1F8 1099 aa15.09■□□□□ 0.01
TCF4-248ENST00000616053 FKBP5Q13451 457 aaPredicted RBP15.08■□□□□ 0.01
TCF4-248ENST00000616053 DEF6Q9H4E7 631 aa15.08■□□□□ 0
TCF4-248ENST00000616053 TRAK1Q9UPV9 953 aa15.08■□□□□ 0
TCF4-248ENST00000616053 GOLGA6L7A0A1B0GV03 622 aa15.07■□□□□ 0
TCF4-248ENST00000616053 CCDC91Q7Z6B0 441 aa15.07■□□□□ 0
TCF4-248ENST00000616053 RRP7AQ9Y3A4 280 aaKnown RBP15.07■□□□□ 0
TCF4-248ENST00000616053 CGNL1Q0VF96 1302 aa15.07■□□□□ 0
TCF4-248ENST00000616053 CENPJQ9HC77 1338 aaPredicted RBP15.07■□□□□ 0
TCF4-248ENST00000616053 ERC2O15083 957 aa15.07■□□□□ 0
TCF4-248ENST00000616053 NAT10Q9H0A0 1025 aaKnown RBP15.06■□□□□ 0
TCF4-248ENST00000616053 ZWINTO95229 277 aa15.06■□□□□ 0
TCF4-248ENST00000616053 IL27Q8NEV9 243 aa15.06■□□□□ 0
TCF4-248ENST00000616053 CETN2P41208 172 aa15.06■□□□□ 0
TCF4-248ENST00000616053 CCDC150Q8NCX0 1101 aa15.06■□□□□ 0
TCF4-248ENST00000616053 DDX49Q9Y6V7 483 aaKnown RBP15.06■□□□□ 0
TCF4-248ENST00000616053 BMP2KQ9NSY1 1161 aaPredicted RBP15.05■□□□□ 0
TCF4-248ENST00000616053 ZNF354CQ86Y25 554 aa15.05■□□□□ 0
TCF4-248ENST00000616053 FAM161AQ3B820 660 aa15.05■□□□□ -0
TCF4-248ENST00000616053 AXDND1Q5T1B0 1012 aaPredicted RBP15.05■□□□□ -0
TCF4-248ENST00000616053 DHX37Q8IY37 1157 aaKnown RBP15.05■□□□□ -0
TCF4-248ENST00000616053 CEP63Q96MT8 703 aa15.05■□□□□ -0
TCF4-248ENST00000616053 HSP90AB3PQ58FF7 597 aa15.05■□□□□ -0
TCF4-248ENST00000616053 SLU7O95391 586 aaKnown RBP15.04■□□□□ -0
TCF4-248ENST00000616053 USP5P45974 858 aa15.04■□□□□ -0
TCF4-248ENST00000616053 STIM1Q13586 685 aa15.04■□□□□ -0
TCF4-248ENST00000616053 SMC3Q9UQE7 1217 aa15.04■□□□□ -0
TCF4-248ENST00000616053 SDF4Q9BRK5 362 aa15.03■□□□□ -0
TCF4-248ENST00000616053 PKD2Q13563 968 aa15.03■□□□□ -0
TCF4-248ENST00000616053 NUTM2GQ5VZR2 741 aa15.03■□□□□ -0
TCF4-248ENST00000616053 REC8O95072 547 aa15.03■□□□□ -0
TCF4-248ENST00000616053 CT47B1P0C2W7 299 aaPredicted RBP15.03■□□□□ -0
TCF4-248ENST00000616053 TTC39AQ5SRH9 613 aa15.03■□□□□ -0
TCF4-248ENST00000616053 BCL11BQ9C0K0 894 aaPredicted RBP15.03■□□□□ -0
TCF4-248ENST00000616053 RBM19Q9Y4C8 960 aaKnown RBP15.03■□□□□ -0
TCF4-248ENST00000616053 BICDL1Q6ZP65 573 aa15.03■□□□□ -0
TCF4-248ENST00000616053 CRACR2BQ8N4Y2 399 aaPredicted RBP15.03■□□□□ -0
TCF4-248ENST00000616053 RCAN3Q9UKA8 241 aa15.03■□□□□ -0
TCF4-248ENST00000616053 PIP4K2AP48426 406 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms