RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 DCAF8L2P0C7V8 631 aa21.83■■□□□ 1.09
TCF4-248ENST00000616053 PELP1Q8IZL8 1130 aaKnown RBP20.5■□□□□ 0.87
TCF4-248ENST00000616053 FAM9AQ8IZU1 332 aaPredicted RBP20.48■□□□□ 0.87
TCF4-248ENST00000616053 EHMT2Q96KQ7 1210 aa20.04■□□□□ 0.8
TCF4-248ENST00000616053 APLP2Q06481 763 aa20■□□□□ 0.79
TCF4-248ENST00000616053 ERICH6Q7L0X2 663 aa19.84■□□□□ 0.77
TCF4-248ENST00000616053 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
TCF4-248ENST00000616053 CCER1Q8TC90 406 aaPredicted RBP19.64■□□□□ 0.73
TCF4-248ENST00000616053 ATP1B4Q9UN42 357 aaPredicted RBP19.5■□□□□ 0.71
TCF4-248ENST00000616053 MYT1LQ9UL68 1186 aa19.44■□□□□ 0.7
TCF4-248ENST00000616053 TTBK1Q5TCY1 1321 aaPredicted RBP19.31■□□□□ 0.68
TCF4-248ENST00000616053 RANGAP1P46060 587 aaPredicted RBP19.28■□□□□ 0.68
TCF4-248ENST00000616053 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
TCF4-248ENST00000616053 DAXXQ9UER7 740 aaPredicted RBP19.07■□□□□ 0.64
TCF4-248ENST00000616053 MYT1Q01538 1121 aa19.06■□□□□ 0.64
TCF4-248ENST00000616053 NEFLP07196 543 aa18.98■□□□□ 0.63
TCF4-248ENST00000616053 SLC4A1APQ9BWU0 796 aaKnown RBP18.95■□□□□ 0.62
TCF4-248ENST00000616053 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
TCF4-248ENST00000616053 POLR3GLQ9BT43 218 aa18.82■□□□□ 0.6
TCF4-248ENST00000616053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.8■□□□□ 0.6
TCF4-248ENST00000616053 HNRNPUL2Q1KMD3 747 aaKnown RBP18.8■□□□□ 0.6
TCF4-248ENST00000616053 PCGF6Q9BYE7 350 aa18.74■□□□□ 0.59
TCF4-248ENST00000616053 CENPBP07199 599 aaPredicted RBP18.7■□□□□ 0.58
TCF4-248ENST00000616053 YTHDC1Q96MU7 727 aaKnown RBP18.63■□□□□ 0.57
TCF4-248ENST00000616053 SLC24A1O60721 1099 aa18.6■□□□□ 0.57
TCF4-248ENST00000616053 CNGB1Q14028 1251 aaPredicted RBP18.55■□□□□ 0.56
TCF4-248ENST00000616053 CLSPNQ9HAW4 1339 aa18.53■□□□□ 0.56
TCF4-248ENST00000616053 UBTFP17480 764 aaKnown RBP18.49■□□□□ 0.55
TCF4-248ENST00000616053 ZNF316A6NFI3 1004 aaPredicted RBP18.44■□□□□ 0.54
TCF4-248ENST00000616053 ZBTB47Q9UFB7 747 aaPredicted RBP18.4■□□□□ 0.54
TCF4-248ENST00000616053 BCANQ96GW7 911 aa18.37■□□□□ 0.53
TCF4-248ENST00000616053 BCL11AQ9H165 835 aa18.28■□□□□ 0.52
TCF4-248ENST00000616053 ITGAEP38570 1179 aa18.19■□□□□ 0.5
TCF4-248ENST00000616053 TRIM41Q8WV44 630 aa18.11■□□□□ 0.49
TCF4-248ENST00000616053 RTL5Q5HYW3 569 aaPredicted RBP18.07■□□□□ 0.48
TCF4-248ENST00000616053 ZEB1P37275 1124 aaPredicted RBP18.05■□□□□ 0.48
TCF4-248ENST00000616053 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
TCF4-248ENST00000616053 NEFMP07197 916 aa18.03■□□□□ 0.48
TCF4-248ENST00000616053 A0A0G2JS52 829 aa17.98■□□□□ 0.47
TCF4-248ENST00000616053 CDK11BP21127 795 aaKnown RBP17.98■□□□□ 0.47
TCF4-248ENST00000616053 CDK11AQ9UQ88 783 aaPredicted RBP17.98■□□□□ 0.47
TCF4-248ENST00000616053 ESF1Q9H501 851 aaKnown RBP17.97■□□□□ 0.47
TCF4-248ENST00000616053 CANXP27824 592 aaKnown RBP17.87■□□□□ 0.45
TCF4-248ENST00000616053 SCAF1Q9H7N4 1312 aaKnown RBP17.83■□□□□ 0.45
TCF4-248ENST00000616053 PPARGC1BQ86YN6 1023 aaKnown RBP17.77■□□□□ 0.44
TCF4-248ENST00000616053 NPM2Q86SE8 214 aaKnown RBP17.72■□□□□ 0.43
TCF4-248ENST00000616053 TRIM52Q96A61 297 aa17.71■□□□□ 0.43
TCF4-248ENST00000616053 FBLN2P98095 1184 aa17.71■□□□□ 0.43
TCF4-248ENST00000616053 STAG3Q9UJ98 1225 aa17.69■□□□□ 0.42
TCF4-248ENST00000616053 ZNF326Q5BKZ1 582 aaKnown RBP17.68■□□□□ 0.42
TCF4-248ENST00000616053 NCBP3Q53F19 620 aaKnown RBP17.66■□□□□ 0.42
TCF4-248ENST00000616053 NISCHQ9Y2I1 1504 aa17.65■□□□□ 0.42
TCF4-248ENST00000616053 TULP1O00294 542 aaPredicted RBP17.65■□□□□ 0.42
TCF4-248ENST00000616053 ANP32BQ92688 251 aaKnown RBP17.55■□□□□ 0.4
TCF4-248ENST00000616053 FAM50AQ14320 339 aaKnown RBP17.53■□□□□ 0.4
TCF4-248ENST00000616053 HSP90AA1P07900 732 aaKnown RBP17.52■□□□□ 0.4
TCF4-248ENST00000616053 PLEKHG5O94827 1062 aa17.47■□□□□ 0.39
TCF4-248ENST00000616053 HAP1P54257 671 aaPredicted RBP17.46■□□□□ 0.39
TCF4-248ENST00000616053 CHGAP10645 457 aaKnown RBP17.42■□□□□ 0.38
TCF4-248ENST00000616053 ZBTB7CA1YPR0 619 aa17.41■□□□□ 0.38
TCF4-248ENST00000616053 NPHP1O15259 732 aa17.4■□□□□ 0.38
TCF4-248ENST00000616053 C14orf37Q86TY3 774 aa17.37■□□□□ 0.37
TCF4-248ENST00000616053 NPM1P06748 294 aaKnown RBP eCLIP17.36■□□□□ 0.37
TCF4-248ENST00000616053 ARXQ96QS3 562 aa17.35■□□□□ 0.37
TCF4-248ENST00000616053 NEUROD1Q13562 356 aa17.32■□□□□ 0.36
TCF4-248ENST00000616053 KRI1Q8N9T8 703 aaKnown RBP17.32■□□□□ 0.36
TCF4-248ENST00000616053 PRM3Q9NNZ6 103 aa17.24■□□□□ 0.35
TCF4-248ENST00000616053 CLSTN1O94985 981 aa17.23■□□□□ 0.35
TCF4-248ENST00000616053 UPF2Q9HAU5 1272 aaKnown RBP17.18■□□□□ 0.34
TCF4-248ENST00000616053 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
TCF4-248ENST00000616053 ARID3CA6NKF2 412 aa17.16■□□□□ 0.34
TCF4-248ENST00000616053 ANP32CO43423 234 aa17.14■□□□□ 0.33
TCF4-248ENST00000616053 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
TCF4-248ENST00000616053 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
TCF4-248ENST00000616053 EIF5BO60841 1220 aaKnown RBP17.09■□□□□ 0.33
TCF4-248ENST00000616053 ANP32AP39687 249 aaKnown RBP17.07■□□□□ 0.32
TCF4-248ENST00000616053 ZRSR1Q15695 479 aaKnown RBP17.05■□□□□ 0.32
TCF4-248ENST00000616053 MYH16Q9H6N6 1097 aa17.02■□□□□ 0.32
TCF4-248ENST00000616053 GOLGA2Q08379 1002 aa17.02■□□□□ 0.31
TCF4-248ENST00000616053 ARID4BQ4LE39 1312 aaPredicted RBP16.99■□□□□ 0.31
TCF4-248ENST00000616053 PPP1R15AO75807 674 aaPredicted RBP16.99■□□□□ 0.31
TCF4-248ENST00000616053 TAOK2Q9UL54 1235 aa16.99■□□□□ 0.31
TCF4-248ENST00000616053 ISY1Q9ULR0 285 aaKnown RBP16.98■□□□□ 0.31
TCF4-248ENST00000616053 TRIM26Q12899 539 aaPredicted RBP16.95■□□□□ 0.3
TCF4-248ENST00000616053 LMOD2Q6P5Q4 547 aa16.95■□□□□ 0.3
TCF4-248ENST00000616053 TRIM44Q96DX7 344 aaPredicted RBP16.93■□□□□ 0.3
TCF4-248ENST00000616053 NCLP19338 710 aaKnown RBP16.91■□□□□ 0.3
TCF4-248ENST00000616053 GLIPR1L2Q4G1C9 344 aa16.91■□□□□ 0.3
TCF4-248ENST00000616053 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.88■□□□□ 0.29
TCF4-248ENST00000616053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.84■□□□□ 0.29
TCF4-248ENST00000616053 TMX4Q9H1E5 349 aaPredicted RBP16.83■□□□□ 0.29
TCF4-248ENST00000616053 HRCP23327 699 aa16.81■□□□□ 0.28
TCF4-248ENST00000616053 SALL2Q9Y467 1007 aaPredicted RBP16.8■□□□□ 0.28
TCF4-248ENST00000616053 FKBP8Q14318 412 aa16.8■□□□□ 0.28
TCF4-248ENST00000616053 TPRNQ4KMQ1 711 aa16.8■□□□□ 0.28
TCF4-248ENST00000616053 TRHP20396 242 aaPredicted RBP16.79■□□□□ 0.28
TCF4-248ENST00000616053 P3H3Q8IVL6 736 aa16.77■□□□□ 0.28
TCF4-248ENST00000616053 DCAF8L1A6NGE4 600 aa16.76■□□□□ 0.27
TCF4-248ENST00000616053 WDR43Q15061 677 aaKnown RBP eCLIP16.75■□□□□ 0.27
TCF4-248ENST00000616053 EIF4G2P78344 907 aaKnown RBP eCLIP16.71■□□□□ 0.272e-7■■■■■ 31.9
Retrieved 100 of 20,778 RNA–protein pairs in 178.5 ms