RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 SPDYE5A6NIY4 337 aa9.79□□□□□ -0.84
SMAD4-203ENST00000585448 FMNL1O95466 1100 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-203ENST00000585448 NDUFV2P19404 249 aa9.79□□□□□ -0.84
SMAD4-203ENST00000585448 TMEM132AQ24JP5 1023 aa9.79□□□□□ -0.84
SMAD4-203ENST00000585448 HLA-CQ95604 372 aa9.79□□□□□ -0.84
SMAD4-203ENST00000585448 ADH1BP00325 375 aa9.78□□□□□ -0.84
SMAD4-203ENST00000585448 MSS51Q4VC12 460 aa9.78□□□□□ -0.84
SMAD4-203ENST00000585448 ZNF516Q92618 1163 aa9.78□□□□□ -0.84
SMAD4-203ENST00000585448 LIMD1Q9UGP4 676 aa9.78□□□□□ -0.84
SMAD4-203ENST00000585448 LILRB3O75022 631 aa9.76□□□□□ -0.85
SMAD4-203ENST00000585448 GUCA2AQ02747 115 aa9.76□□□□□ -0.85
SMAD4-203ENST00000585448 PPP2R2DQ66LE6 453 aa9.76□□□□□ -0.85
SMAD4-203ENST00000585448 RETREG3Q86VR2 466 aa9.76□□□□□ -0.85
SMAD4-203ENST00000585448 PLA2G2EQ9NZK7 142 aa9.76□□□□□ -0.85
SMAD4-203ENST00000585448 MTMR2Q13614 643 aa9.75□□□□□ -0.85
SMAD4-203ENST00000585448 RNF19BQ6ZMZ0 732 aa9.75□□□□□ -0.85
SMAD4-203ENST00000585448 SPSB2Q99619 263 aa9.75□□□□□ -0.85
SMAD4-203ENST00000585448 ZBTB3Q9H5J0 574 aa9.75□□□□□ -0.85
SMAD4-203ENST00000585448 DESI1Q6ICB0 168 aa9.74□□□□□ -0.85
SMAD4-203ENST00000585448 PCMTD1Q96MG8 357 aaPredicted RBP9.74□□□□□ -0.85
SMAD4-203ENST00000585448 USB1Q9BQ65 265 aaKnown RBP9.74□□□□□ -0.85
SMAD4-203ENST00000585448 POLR3EQ9NVU0 708 aa9.73□□□□□ -0.85
SMAD4-203ENST00000585448 PCDHB15Q9Y5E8 787 aa9.73□□□□□ -0.85
SMAD4-203ENST00000585448 TLL1O43897 1013 aa9.72□□□□□ -0.85
SMAD4-203ENST00000585448 MMP16P51512 607 aa9.71□□□□□ -0.86
SMAD4-203ENST00000585448 FAM160A2Q8N612 972 aaPredicted RBP9.71□□□□□ -0.86
SMAD4-203ENST00000585448 C6orf229H3BNL8 230 aa9.7□□□□□ -0.86
SMAD4-203ENST00000585448 PROCA1Q8NCQ7 364 aaPredicted RBP9.7□□□□□ -0.86
SMAD4-203ENST00000585448 SLC6A16Q9GZN6 736 aa9.7□□□□□ -0.86
SMAD4-203ENST00000585448 A0A0G2JS52 829 aa9.69□□□□□ -0.86
SMAD4-203ENST00000585448 GGCXP38435 758 aa9.69□□□□□ -0.86
SMAD4-203ENST00000585448 QPCTQ16769 361 aa9.69□□□□□ -0.86
SMAD4-203ENST00000585448 NKX2-3Q8TAU0 364 aa9.69□□□□□ -0.86
SMAD4-203ENST00000585448 DXOO77932 396 aaKnown RBP9.68□□□□□ -0.86
SMAD4-203ENST00000585448 SYMPKQ92797 1274 aaKnown RBP9.67□□□□□ -0.86
SMAD4-203ENST00000585448 JUNDP17535 347 aa9.66□□□□□ -0.86
SMAD4-203ENST00000585448 PRR7Q8TB68 274 aa9.66□□□□□ -0.86
SMAD4-203ENST00000585448 CABLES1Q8TDN4 633 aa9.66□□□□□ -0.86
SMAD4-203ENST00000585448 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.66□□□□□ -0.86
SMAD4-203ENST00000585448 PPP1R18Q6NYC8 613 aa9.65□□□□□ -0.86
SMAD4-203ENST00000585448 ANKLE1Q8NAG6 615 aa9.65□□□□□ -0.86
SMAD4-203ENST00000585448 NUTM2BA6NNL0 878 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-203ENST00000585448 NUTM2EB1AL46 878 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-203ENST00000585448 CFAP99D6REC4 459 aa9.64□□□□□ -0.87
SMAD4-203ENST00000585448 S1PR4O95977 384 aa9.64□□□□□ -0.87
SMAD4-203ENST00000585448 CSPP1Q1MSJ5 1256 aa9.64□□□□□ -0.87
SMAD4-203ENST00000585448 RTL5Q5HYW3 569 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-203ENST00000585448 NUTM2DQ5VT03 806 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-203ENST00000585448 NUTM2AQ8IVF1 878 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-203ENST00000585448 SOCS7O14512 581 aa9.63□□□□□ -0.87
SMAD4-203ENST00000585448 RFC5P40937 340 aa9.63□□□□□ -0.87
SMAD4-203ENST00000585448 PTPRNQ16849 979 aa9.63□□□□□ -0.87
SMAD4-203ENST00000585448 FBXO31Q5XUX0 539 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-203ENST00000585448 HELBQ8NG08 1087 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-203ENST00000585448 RNF223E7ERA6 249 aa9.62□□□□□ -0.87
SMAD4-203ENST00000585448 RGS20O76081 388 aa9.62□□□□□ -0.87
SMAD4-203ENST00000585448 TMEM259Q4ZIN3 620 aa9.62□□□□□ -0.87
SMAD4-203ENST00000585448 PRDM9Q9NQV7 894 aa9.62□□□□□ -0.87
SMAD4-203ENST00000585448 LYPD8Q6UX82 237 aa9.61□□□□□ -0.87
SMAD4-203ENST00000585448 BCL11AQ9H165 835 aa9.61□□□□□ -0.87
SMAD4-203ENST00000585448 BANK1Q8NDB2 785 aa9.6□□□□□ -0.87
SMAD4-203ENST00000585448 CCNYL3P0C7X3 344 aa9.57□□□□□ -0.88
SMAD4-203ENST00000585448 NUDT12Q9BQG2 462 aa9.57□□□□□ -0.88
SMAD4-203ENST00000585448 EVA1BQ9NVM1 165 aa9.57□□□□□ -0.88
SMAD4-203ENST00000585448 F12P00748 615 aaPredicted RBP9.56□□□□□ -0.88
SMAD4-203ENST00000585448 ATP1B4Q9UN42 357 aaPredicted RBP9.56□□□□□ -0.88
SMAD4-203ENST00000585448 FCF1Q9Y324 198 aaKnown RBP9.56□□□□□ -0.88
SMAD4-203ENST00000585448 RPIAP49247 311 aa9.55□□□□□ -0.88
SMAD4-203ENST00000585448 V9GY48 417 aaPredicted RBP9.55□□□□□ -0.88
SMAD4-203ENST00000585448 CTDSPL2Q05D32 466 aa9.54□□□□□ -0.88
SMAD4-203ENST00000585448 PPEF1O14829 653 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-203ENST00000585448 PER1O15534 1290 aaPredicted RBP9.53□□□□□ -0.88
SMAD4-203ENST00000585448 USP17L8P0C7I0 530 aa9.53□□□□□ -0.88
SMAD4-203ENST00000585448 KCNH2Q12809 1159 aa9.53□□□□□ -0.88
SMAD4-203ENST00000585448 PLA2G2CQ5R387 149 aa9.52□□□□□ -0.89
SMAD4-203ENST00000585448 AP1G2O75843 785 aa9.51□□□□□ -0.89
SMAD4-203ENST00000585448 CENPBP07199 599 aaPredicted RBP9.51□□□□□ -0.89
SMAD4-203ENST00000585448 TSC1Q92574 1164 aa9.5□□□□□ -0.89
SMAD4-203ENST00000585448 EMID1Q96A84 441 aaPredicted RBP9.5□□□□□ -0.89
SMAD4-203ENST00000585448 APBB1O00213 710 aa9.49□□□□□ -0.89
SMAD4-203ENST00000585448 FLIIQ13045 1269 aa9.48□□□□□ -0.89
SMAD4-203ENST00000585448 ARMC2Q8NEN0 867 aa9.48□□□□□ -0.89
SMAD4-203ENST00000585448 GPKOWQ92917 476 aaPredicted RBP eCLIP9.48□□□□□ -0.89
SMAD4-203ENST00000585448 UNC93B1Q9H1C4 597 aa9.48□□□□□ -0.89
SMAD4-203ENST00000585448 ZBTB24O43167 697 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-203ENST00000585448 SLC19A1P41440 591 aa9.47□□□□□ -0.89
SMAD4-203ENST00000585448 PTCRAQ6ISU1 281 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-203ENST00000585448 LIAT1Q6ZQX7 453 aa9.47□□□□□ -0.89
SMAD4-203ENST00000585448 LRRN4Q8WUT4 740 aa9.47□□□□□ -0.89
SMAD4-203ENST00000585448 ZC3H4Q9UPT8 1303 aaKnown RBP9.47□□□□□ -0.89
SMAD4-203ENST00000585448 TRIM32Q13049 653 aa9.46□□□□□ -0.9
SMAD4-203ENST00000585448 SPRYD7Q5W111 196 aa9.46□□□□□ -0.9
SMAD4-203ENST00000585448 CCDC24Q8N4L8 307 aa9.46□□□□□ -0.9
SMAD4-203ENST00000585448 MTMR14Q8NCE2 650 aa9.46□□□□□ -0.9
SMAD4-203ENST00000585448 GJD4Q96KN9 370 aaPredicted RBP9.46□□□□□ -0.9
SMAD4-203ENST00000585448 MAP10Q9P2G4 905 aa9.46□□□□□ -0.9
SMAD4-203ENST00000585448 CD2BP2O95400 341 aaKnown RBP9.45□□□□□ -0.9
SMAD4-203ENST00000585448 WNT7BP56706 349 aa9.45□□□□□ -0.9
SMAD4-203ENST00000585448 MCM6Q14566 821 aa9.45□□□□□ -0.9
SMAD4-203ENST00000585448 TRIM34Q9BYJ4 488 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms