RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GLI2P10070 1586 aa29.73■■■□□ 2.35
VPS53-211ENST00000571805 BCAR3O75815 825 aa29.71■■■□□ 2.35
VPS53-211ENST00000571805 NEXMIFQ5QGS0 1516 aa29.71■■■□□ 2.35
VPS53-211ENST00000571805 NBR1Q14596 966 aa29.71■■■□□ 2.35
VPS53-211ENST00000571805 DIP2CQ9Y2E4 1556 aa29.71■■■□□ 2.35
VPS53-211ENST00000571805 WWC1Q8IX03 1113 aa29.7■■■□□ 2.34
VPS53-211ENST00000571805 PUS7Q96PZ0 661 aaKnown RBP29.69■■■□□ 2.34
VPS53-211ENST00000571805 ARHGEF28Q8N1W1 1705 aaKnown RBP29.69■■■□□ 2.34
VPS53-211ENST00000571805 VGFO15240 615 aaPredicted RBP29.68■■■□□ 2.34
VPS53-211ENST00000571805 ARHGAP31Q2M1Z3 1444 aa29.67■■■□□ 2.34
VPS53-211ENST00000571805 TULP4Q9NRJ4 1543 aa29.66■■■□□ 2.34
VPS53-211ENST00000571805 TNNT2P45379 298 aaPredicted RBP29.66■■■□□ 2.34
VPS53-211ENST00000571805 NUTM2DQ5VT03 806 aaPredicted RBP29.66■■■□□ 2.34
VPS53-211ENST00000571805 CGNL1Q0VF96 1302 aa29.64■■■□□ 2.34
VPS53-211ENST00000571805 RUNDC1Q96C34 613 aa29.63■■■□□ 2.33
VPS53-211ENST00000571805 EVC2Q86UK5 1308 aa29.63■■■□□ 2.33
VPS53-211ENST00000571805 IQSEC2Q5JU85 1478 aa29.63■■■□□ 2.33
VPS53-211ENST00000571805 RICTORQ6R327 1708 aa29.62■■■□□ 2.33
VPS53-211ENST00000571805 PHF23Q9BUL5 403 aaPredicted RBP29.61■■■□□ 2.33
VPS53-211ENST00000571805 MTHFSP49914 203 aa29.61■■■□□ 2.33
VPS53-211ENST00000571805 ANKRD36BQ8N2N9 1353 aa29.6■■■□□ 2.33
VPS53-211ENST00000571805 IDI1Q13907 227 aa29.6■■■□□ 2.33
VPS53-211ENST00000571805 DEKP35659 375 aaKnown RBP29.6■■■□□ 2.33
VPS53-211ENST00000571805 ZFYVE9O95405 1425 aa29.59■■■□□ 2.33
VPS53-211ENST00000571805 PDE3AQ14432 1141 aa29.59■■■□□ 2.33
VPS53-211ENST00000571805 TCP11L2Q8N4U5 519 aa29.58■■■□□ 2.33
VPS53-211ENST00000571805 BCL11AQ9H165 835 aa29.58■■■□□ 2.33
VPS53-211ENST00000571805 NSD2O96028 1365 aa29.57■■■□□ 2.32
VPS53-211ENST00000571805 RRP7AQ9Y3A4 280 aaKnown RBP29.55■■■□□ 2.32
VPS53-211ENST00000571805 NINLQ9Y2I6 1382 aa29.55■■■□□ 2.32
VPS53-211ENST00000571805 NEUROD2Q15784 382 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 SLC52A1Q9NWF4 448 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 FAM161AQ3B820 660 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 C8orf34Q49A92 452 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 CFAP53Q96M91 514 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 CABP2Q9NPB3 220 aa29.54■■■□□ 2.32
VPS53-211ENST00000571805 YEATS2Q9ULM3 1422 aa29.53■■■□□ 2.32
VPS53-211ENST00000571805 MYO5BQ9ULV0 1848 aa29.53■■■□□ 2.32
VPS53-211ENST00000571805 WDR63Q8IWG1 891 aa29.53■■■□□ 2.32
VPS53-211ENST00000571805 CCDC27Q2M243 656 aa29.52■■■□□ 2.32
VPS53-211ENST00000571805 DDRGK1Q96HY6 314 aa29.5■■■□□ 2.31
VPS53-211ENST00000571805 TMEM131LA2VDJ0 1609 aa29.49■■■□□ 2.31
VPS53-211ENST00000571805 PREX1Q8TCU6 1659 aa29.49■■■□□ 2.31
VPS53-211ENST00000571805 IGHDP01880 384 aa29.49■■■□□ 2.31
VPS53-211ENST00000571805 RARSP54136 660 aaKnown RBP29.48■■■□□ 2.31
VPS53-211ENST00000571805 NCBP3Q53F19 620 aaKnown RBP29.48■■■□□ 2.31
VPS53-211ENST00000571805 PANK1Q8TE04 598 aa29.47■■■□□ 2.31
VPS53-211ENST00000571805 SAFB2Q14151 953 aaKnown RBP eCLIP29.47■■■□□ 2.31
VPS53-211ENST00000571805 RGS3P49796 1198 aa29.46■■■□□ 2.31
VPS53-211ENST00000571805 RTL5Q5HYW3 569 aaPredicted RBP29.46■■■□□ 2.31
VPS53-211ENST00000571805 ABCC11Q96J66 1382 aa29.45■■■□□ 2.31
VPS53-211ENST00000571805 CLUAP1Q96AJ1 413 aa29.45■■■□□ 2.31
VPS53-211ENST00000571805 COG6Q9Y2V7 657 aa29.45■■■□□ 2.31
VPS53-211ENST00000571805 A0A1W2PP64 1363 aa29.45■■■□□ 2.3
VPS53-211ENST00000571805 STK26Q9P289 416 aa29.45■■■□□ 2.3
VPS53-211ENST00000571805 PTPRMP28827 1452 aa29.44■■■□□ 2.3
VPS53-211ENST00000571805 CANXP27824 592 aaKnown RBP29.44■■■□□ 2.3
VPS53-211ENST00000571805 ADGRB2O60241 1585 aa29.43■■■□□ 2.3
VPS53-211ENST00000571805 LAS1LQ9Y4W2 734 aaKnown RBP29.42■■■□□ 2.3
VPS53-211ENST00000571805 U2AF1L5P0DN76 240 aaPredicted RBP29.41■■■□□ 2.3
VPS53-211ENST00000571805 U2AF1Q01081 240 aaKnown RBP eCLIP29.41■■■□□ 2.3
VPS53-211ENST00000571805 FRAT1Q92837 279 aaPredicted RBP29.4■■■□□ 2.3
VPS53-211ENST00000571805 SRPK2P78362 688 aaKnown RBP29.39■■■□□ 2.3
VPS53-211ENST00000571805 CLTCQ00610 1675 aaKnown RBP29.38■■■□□ 2.29
VPS53-211ENST00000571805 SENP3Q9H4L4 574 aaPredicted RBP29.38■■■□□ 2.29
VPS53-211ENST00000571805 YTHDC2Q9H6S0 1430 aaKnown RBP29.37■■■□□ 2.29
VPS53-211ENST00000571805 CD163L1Q9NR16 1453 aa29.36■■■□□ 2.29
VPS53-211ENST00000571805 ATAD2Q6PL18 1390 aa29.36■■■□□ 2.29
VPS53-211ENST00000571805 PPM1GO15355 546 aaPredicted RBP29.36■■■□□ 2.29
VPS53-211ENST00000571805 AAMPQ13685 434 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 PRAM1Q96QH2 718 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 MYH16Q9H6N6 1097 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 COL3A1P02461 1466 aaPredicted RBP29.35■■■□□ 2.29
VPS53-211ENST00000571805 ANKRD26Q9UPS8 1709 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 RLBP1P12271 317 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 GGNBP2Q9H3C7 697 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 USP35Q9P2H5 1018 aa29.35■■■□□ 2.29
VPS53-211ENST00000571805 VIRMAQ69YN4 1812 aaKnown RBP29.34■■■□□ 2.29
VPS53-211ENST00000571805 FBXO31Q5XUX0 539 aaPredicted RBP29.34■■■□□ 2.29
VPS53-211ENST00000571805 TNNQ9UQP3 1299 aa29.34■■■□□ 2.29
VPS53-211ENST00000571805 MINK1Q8N4C8 1332 aaPredicted RBP29.34■■■□□ 2.29
VPS53-211ENST00000571805 PLEKHF1Q96S99 279 aa29.33■■■□□ 2.29
VPS53-211ENST00000571805 MED14O60244 1454 aa29.33■■■□□ 2.29
VPS53-211ENST00000571805 NLRP1Q9C000 1473 aa29.33■■■□□ 2.29
VPS53-211ENST00000571805 FYB1O15117 783 aa29.33■■■□□ 2.29
VPS53-211ENST00000571805 NEFMP07197 916 aa29.32■■■□□ 2.28
VPS53-211ENST00000571805 TERF2IPQ9NYB0 399 aa29.32■■■□□ 2.28
VPS53-211ENST00000571805 ALKQ9UM73 1620 aa29.32■■■□□ 2.28
VPS53-211ENST00000571805 BCL2L13Q9BXK5 485 aa29.31■■■□□ 2.28
VPS53-211ENST00000571805 POGKQ9P215 609 aa29.3■■■□□ 2.28
VPS53-211ENST00000571805 MAPK8IP3Q9UPT6 1336 aa29.3■■■□□ 2.28
VPS53-211ENST00000571805 SLC4A3P48751 1232 aa29.28■■■□□ 2.28
VPS53-211ENST00000571805 PCDHB15Q9Y5E8 787 aa29.28■■■□□ 2.28
VPS53-211ENST00000571805 PMFBP1Q8TBY8 1022 aa29.28■■■□□ 2.28
VPS53-211ENST00000571805 ARHGEF40Q8TER5 1519 aa29.26■■■□□ 2.28
VPS53-211ENST00000571805 U2SURPO15042 1029 aaKnown RBP29.26■■■□□ 2.27
VPS53-211ENST00000571805 TMPOP42166 694 aaKnown RBP29.26■■■□□ 2.27
VPS53-211ENST00000571805 CYB5RLQ6IPT4 315 aa29.25■■■□□ 2.27
VPS53-211ENST00000571805 TRIM35Q9UPQ4 493 aa29.25■■■□□ 2.27
VPS53-211ENST00000571805 CT47B1P0C2W7 299 aaPredicted RBP29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms