RNA–Protein interactions for RNA: ENST00000554819.5

SCFD1-214, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 608 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-214ENST00000554819 SPSB2Q99619 263 aa8.85□□□□□ -0.99
SCFD1-214ENST00000554819 SPDYE5A6NIY4 337 aa8.84□□□□□ -0.99
SCFD1-214ENST00000554819 ADH1BP00325 375 aa8.84□□□□□ -0.99
SCFD1-214ENST00000554819 PRPF38BQ5VTL8 546 aaKnown RBP8.84□□□□□ -0.99
SCFD1-214ENST00000554819 THAP11Q96EK4 314 aa8.84□□□□□ -0.99
SCFD1-214ENST00000554819 PCMTD1Q96MG8 357 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-214ENST00000554819 PCDHGC3Q9UN70 934 aa8.84□□□□□ -0.99
SCFD1-214ENST00000554819 C6orf229H3BNL8 230 aa8.83□□□□□ -1
SCFD1-214ENST00000554819 MTMR2Q13614 643 aa8.83□□□□□ -1
SCFD1-214ENST00000554819 ZBTB3Q9H5J0 574 aa8.83□□□□□ -1
SCFD1-214ENST00000554819 LIMD1Q9UGP4 676 aa8.83□□□□□ -1
SCFD1-214ENST00000554819 RNF19BQ6ZMZ0 732 aa8.82□□□□□ -1
SCFD1-214ENST00000554819 USB1Q9BQ65 265 aaKnown RBP8.82□□□□□ -1
SCFD1-214ENST00000554819 PCDHB15Q9Y5E8 787 aa8.82□□□□□ -1
SCFD1-214ENST00000554819 NUTM2BA6NNL0 878 aaPredicted RBP8.81□□□□□ -1
SCFD1-214ENST00000554819 NUTM2EB1AL46 878 aaPredicted RBP8.81□□□□□ -1
SCFD1-214ENST00000554819 GGCXP38435 758 aa8.81□□□□□ -1
SCFD1-214ENST00000554819 CSPP1Q1MSJ5 1256 aa8.81□□□□□ -1
SCFD1-214ENST00000554819 TMEM132AQ24JP5 1023 aa8.81□□□□□ -1
SCFD1-214ENST00000554819 NUTM2DQ5VT03 806 aaPredicted RBP8.81□□□□□ -1
SCFD1-214ENST00000554819 RETREG3Q86VR2 466 aa8.81□□□□□ -1
SCFD1-214ENST00000554819 NUTM2AQ8IVF1 878 aaPredicted RBP8.81□□□□□ -1
SCFD1-214ENST00000554819 NKX2-3Q8TAU0 364 aa8.81□□□□□ -1
SCFD1-214ENST00000554819 TLL1O43897 1013 aa8.8□□□□□ -1
SCFD1-214ENST00000554819 HRCP23327 699 aa8.8□□□□□ -1
SCFD1-214ENST00000554819 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.8□□□□□ -1
SCFD1-214ENST00000554819 SLC6A16Q9GZN6 736 aa8.8□□□□□ -1
SCFD1-214ENST00000554819 LILRB3O75022 631 aa8.79□□□□□ -1
SCFD1-214ENST00000554819 MSS51Q4VC12 460 aa8.79□□□□□ -1
SCFD1-214ENST00000554819 PROCA1Q8NCQ7 364 aaPredicted RBP8.79□□□□□ -1
SCFD1-214ENST00000554819 SYMPKQ92797 1274 aaKnown RBP8.79□□□□□ -1
SCFD1-214ENST00000554819 FAM160A2Q8N612 972 aaPredicted RBP8.78□□□□□ -1
SCFD1-214ENST00000554819 QPCTQ16769 361 aa8.76□□□□□ -1.01
SCFD1-214ENST00000554819 PPP2R2DQ66LE6 453 aa8.76□□□□□ -1.01
SCFD1-214ENST00000554819 PPP1R18Q6NYC8 613 aa8.76□□□□□ -1.01
SCFD1-214ENST00000554819 PRR7Q8TB68 274 aa8.76□□□□□ -1.01
SCFD1-214ENST00000554819 CABLES1Q8TDN4 633 aa8.76□□□□□ -1.01
SCFD1-214ENST00000554819 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.76□□□□□ -1.01
SCFD1-214ENST00000554819 S1PR4O95977 384 aa8.75□□□□□ -1.01
SCFD1-214ENST00000554819 DESI1Q6ICB0 168 aa8.75□□□□□ -1.01
SCFD1-214ENST00000554819 A0A0G2JS52 829 aa8.74□□□□□ -1.01
SCFD1-214ENST00000554819 MMP16P51512 607 aa8.74□□□□□ -1.01
SCFD1-214ENST00000554819 JUNDP17535 347 aa8.73□□□□□ -1.01
SCFD1-214ENST00000554819 RTL5Q5HYW3 569 aaPredicted RBP8.73□□□□□ -1.01
SCFD1-214ENST00000554819 CFAP99D6REC4 459 aa8.72□□□□□ -1.01
SCFD1-214ENST00000554819 DXOO77932 396 aaKnown RBP8.72□□□□□ -1.01
SCFD1-214ENST00000554819 HELBQ8NG08 1087 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-214ENST00000554819 RNF223E7ERA6 249 aa8.71□□□□□ -1.02
SCFD1-214ENST00000554819 ANKLE1Q8NAG6 615 aa8.71□□□□□ -1.02
SCFD1-214ENST00000554819 TSC1Q92574 1164 aa8.71□□□□□ -1.02
SCFD1-214ENST00000554819 PRDM9Q9NQV7 894 aa8.71□□□□□ -1.02
SCFD1-214ENST00000554819 RFC5P40937 340 aa8.7□□□□□ -1.02
SCFD1-214ENST00000554819 TMEM259Q4ZIN3 620 aa8.7□□□□□ -1.02
SCFD1-214ENST00000554819 PTPRNQ16849 979 aa8.69□□□□□ -1.02
SCFD1-214ENST00000554819 PPEF1O14829 653 aaPredicted RBP8.68□□□□□ -1.02
SCFD1-214ENST00000554819 LYPD8Q6UX82 237 aa8.68□□□□□ -1.02
SCFD1-214ENST00000554819 FCF1Q9Y324 198 aaKnown RBP8.68□□□□□ -1.02
SCFD1-214ENST00000554819 AP1G2O75843 785 aa8.67□□□□□ -1.02
SCFD1-214ENST00000554819 FBXO31Q5XUX0 539 aaPredicted RBP8.67□□□□□ -1.02
SCFD1-214ENST00000554819 CCDC24Q8N4L8 307 aa8.67□□□□□ -1.02
SCFD1-214ENST00000554819 NUDT12Q9BQG2 462 aa8.67□□□□□ -1.02
SCFD1-214ENST00000554819 RGS20O76081 388 aa8.66□□□□□ -1.02
SCFD1-214ENST00000554819 CCNYL3P0C7X3 344 aa8.66□□□□□ -1.02
SCFD1-214ENST00000554819 CTDSPL2Q05D32 466 aa8.66□□□□□ -1.02
SCFD1-214ENST00000554819 ZBTB24O43167 697 aaPredicted RBP8.65□□□□□ -1.02
SCFD1-214ENST00000554819 BANK1Q8NDB2 785 aa8.65□□□□□ -1.02
SCFD1-214ENST00000554819 EVA1BQ9NVM1 165 aa8.65□□□□□ -1.02
SCFD1-214ENST00000554819 PER1O15534 1290 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-214ENST00000554819 CTHP32929 405 aa8.62□□□□□ -1.03
SCFD1-214ENST00000554819 RPIAP49247 311 aa8.62□□□□□ -1.03
SCFD1-214ENST00000554819 KCNH2Q12809 1159 aa8.62□□□□□ -1.03
SCFD1-214ENST00000554819 CD2BP2O95400 341 aaKnown RBP8.61□□□□□ -1.03
SCFD1-214ENST00000554819 USP17L8P0C7I0 530 aa8.61□□□□□ -1.03
SCFD1-214ENST00000554819 SLC19A1P41440 591 aa8.61□□□□□ -1.03
SCFD1-214ENST00000554819 V9GY48 417 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-214ENST00000554819 PLA2G2CQ5R387 149 aa8.6□□□□□ -1.03
SCFD1-214ENST00000554819 APBB1O00213 710 aa8.59□□□□□ -1.03
SCFD1-214ENST00000554819 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-214ENST00000554819 LRRN4Q8WUT4 740 aa8.59□□□□□ -1.03
SCFD1-214ENST00000554819 PRKD2Q9BZL6 878 aa8.59□□□□□ -1.03
SCFD1-214ENST00000554819 LIAT1Q6ZQX7 453 aa8.58□□□□□ -1.04
SCFD1-214ENST00000554819 ARMC2Q8NEN0 867 aa8.58□□□□□ -1.04
SCFD1-214ENST00000554819 UNC93B1Q9H1C4 597 aa8.58□□□□□ -1.04
SCFD1-214ENST00000554819 SOCS7O14512 581 aa8.57□□□□□ -1.04
SCFD1-214ENST00000554819 PTCRAQ6ISU1 281 aaPredicted RBP8.57□□□□□ -1.04
SCFD1-214ENST00000554819 PNMA1Q8ND90 353 aa8.57□□□□□ -1.04
SCFD1-214ENST00000554819 MAP10Q9P2G4 905 aa8.57□□□□□ -1.04
SCFD1-214ENST00000554819 TRIM32Q13049 653 aa8.56□□□□□ -1.04
SCFD1-214ENST00000554819 SPRYD7Q5W111 196 aa8.56□□□□□ -1.04
SCFD1-214ENST00000554819 FLIIQ13045 1269 aa8.55□□□□□ -1.04
SCFD1-214ENST00000554819 NR6A1Q15406 480 aa8.55□□□□□ -1.04
SCFD1-214ENST00000554819 ZNF598Q86UK7 904 aaKnown RBP8.55□□□□□ -1.04
SCFD1-214ENST00000554819 EMID1Q96A84 441 aaPredicted RBP8.55□□□□□ -1.04
SCFD1-214ENST00000554819 PRM3Q9NNZ6 103 aa8.55□□□□□ -1.04
SCFD1-214ENST00000554819 HMX1Q9NP08 348 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-214ENST00000554819 SNRKQ9NRH2 765 aa8.54□□□□□ -1.04
SCFD1-214ENST00000554819 WNT7BP56706 349 aa8.53□□□□□ -1.04
SCFD1-214ENST00000554819 BAP1Q92560 729 aa8.53□□□□□ -1.04
SCFD1-214ENST00000554819 GPKOWQ92917 476 aaPredicted RBP eCLIP8.53□□□□□ -1.04
SCFD1-214ENST00000554819 ZNF697Q5TEC3 545 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms