RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 TRIM34Q9BYJ4 488 aa23.19■■□□□ 1.3
HDAC4-215ENST00000543185 STK26Q9P289 416 aa23.19■■□□□ 1.3
HDAC4-215ENST00000543185 AMPHP49418 695 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 EVC2Q86UK5 1308 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 KIF2AO00139 706 aaPredicted RBP23.18■■□□□ 1.3
HDAC4-215ENST00000543185 CDC45O75419 566 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 CCDC192P0DO97 292 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 TRAK2O60296 914 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 SDF4Q9BRK5 362 aa23.18■■□□□ 1.3
HDAC4-215ENST00000543185 JMYQ8N9B5 988 aa23.17■■□□□ 1.3
HDAC4-215ENST00000543185 HIP1O00291 1037 aa23.17■■□□□ 1.3
HDAC4-215ENST00000543185 STK11IPQ8N1F8 1099 aa23.17■■□□□ 1.3
HDAC4-215ENST00000543185 ZNHIT6Q9NWK9 470 aaKnown RBP23.17■■□□□ 1.3
HDAC4-215ENST00000543185 CNTLNQ9NXG0 1405 aa23.17■■□□□ 1.3
HDAC4-215ENST00000543185 EZRP15311 586 aaKnown RBP23.17■■□□□ 1.3
HDAC4-215ENST00000543185 FAM107BQ9H098 131 aa23.17■■□□□ 1.3
HDAC4-215ENST00000543185 CWC22Q9HCG8 908 aaKnown RBP23.16■■□□□ 1.3
HDAC4-215ENST00000543185 WIZO95785 1651 aa23.16■■□□□ 1.3
HDAC4-215ENST00000543185 HSP90AB3PQ58FF7 597 aa23.16■■□□□ 1.3
HDAC4-215ENST00000543185 DDX58O95786 925 aaKnown RBP23.16■■□□□ 1.3
HDAC4-215ENST00000543185 TXLNAP40222 546 aa23.15■■□□□ 1.3
HDAC4-215ENST00000543185 PODXL2Q9NZ53 605 aa23.15■■□□□ 1.3
HDAC4-215ENST00000543185 RALYLQ86SE5 291 aaKnown RBP23.15■■□□□ 1.3
HDAC4-215ENST00000543185 CCDC112Q8NEF3 446 aa23.15■■□□□ 1.3
HDAC4-215ENST00000543185 ZNF396Q96N95 335 aaPredicted RBP23.15■■□□□ 1.3
HDAC4-215ENST00000543185 NFXL1Q6ZNB6 911 aa23.15■■□□□ 1.3
HDAC4-215ENST00000543185 MIA2Q96PC5 1412 aa23.14■■□□□ 1.3
HDAC4-215ENST00000543185 L3MBTL2Q969R5 705 aa23.14■■□□□ 1.29
HDAC4-215ENST00000543185 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.14■■□□□ 1.291e-6■■■■■ 199.7
HDAC4-215ENST00000543185 DACH1Q9UI36 760 aa23.13■■□□□ 1.29
HDAC4-215ENST00000543185 SLC4A3P48751 1232 aa23.13■■□□□ 1.29
HDAC4-215ENST00000543185 C1orf141Q5JVX7 400 aa23.13■■□□□ 1.29
HDAC4-215ENST00000543185 PDILTQ8N807 584 aa23.13■■□□□ 1.29
HDAC4-215ENST00000543185 EXOC6Q8TAG9 804 aa23.13■■□□□ 1.29
HDAC4-215ENST00000543185 MAGEC2Q9UBF1 373 aaPredicted RBP23.12■■□□□ 1.29
HDAC4-215ENST00000543185 DDX11Q96FC9 970 aa23.12■■□□□ 1.29
HDAC4-215ENST00000543185 MCM3P25205 808 aa23.11■■□□□ 1.29
HDAC4-215ENST00000543185 GTF2E1P29083 439 aaPredicted RBP23.11■■□□□ 1.29
HDAC4-215ENST00000543185 BRD4O60885 1362 aaPredicted RBP23.11■■□□□ 1.29
HDAC4-215ENST00000543185 SMC2O95347 1197 aa23.1■■□□□ 1.29
HDAC4-215ENST00000543185 SART3Q15020 963 aaKnown RBP23.1■■□□□ 1.29
HDAC4-215ENST00000543185 SEPT7Q16181 437 aaKnown RBP23.1■■□□□ 1.29
HDAC4-215ENST00000543185 CBFA2T2O43439 604 aa23.1■■□□□ 1.29
HDAC4-215ENST00000543185 G3BP1Q13283 466 aaKnown RBP eCLIP23.09■■□□□ 1.29
HDAC4-215ENST00000543185 FOXD1Q16676 465 aa23.09■■□□□ 1.29
HDAC4-215ENST00000543185 COG6Q9Y2V7 657 aa23.09■■□□□ 1.29
HDAC4-215ENST00000543185 RAPGEF2Q9Y4G8 1499 aa23.09■■□□□ 1.29
HDAC4-215ENST00000543185 CNTROBQ8N137 903 aa23.08■■□□□ 1.29
HDAC4-215ENST00000543185 STIM1Q13586 685 aa23.08■■□□□ 1.29
HDAC4-215ENST00000543185 COG3Q96JB2 828 aa23.08■■□□□ 1.28
HDAC4-215ENST00000543185 ANKRD1Q15327 319 aa23.07■■□□□ 1.28
HDAC4-215ENST00000543185 EID1Q9Y6B2 187 aa23.07■■□□□ 1.28
HDAC4-215ENST00000543185 CTDP1Q9Y5B0 961 aaPredicted RBP23.07■■□□□ 1.28
HDAC4-215ENST00000543185 DHX57Q6P158 1386 aaKnown RBP23.07■■□□□ 1.28
HDAC4-215ENST00000543185 VPS37DQ86XT2 251 aa23.06■■□□□ 1.28
HDAC4-215ENST00000543185 LRRCC1Q9C099 1032 aa23.06■■□□□ 1.28
HDAC4-215ENST00000543185 GBP2P32456 591 aaPredicted RBP23.06■■□□□ 1.28
HDAC4-215ENST00000543185 SLC26A8Q96RN1 970 aa23.06■■□□□ 1.28
HDAC4-215ENST00000543185 PANK3Q9H999 370 aa23.06■■□□□ 1.28
HDAC4-215ENST00000543185 ENOX2Q16206 610 aaKnown RBP23.05■■□□□ 1.28
HDAC4-215ENST00000543185 EFCAB2Q5VUJ9 269 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 UQCRHLA0A096LP55 91 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 UQCRHP07919 91 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 AEBP1Q8IUX7 1158 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 MAP9Q49MG5 647 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 TTC5Q8N0Z6 440 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 SYCP1Q15431 976 aa23.05■■□□□ 1.28
HDAC4-215ENST00000543185 GBP3Q9H0R5 595 aa23.04■■□□□ 1.28
HDAC4-215ENST00000543185 RUNDC1Q96C34 613 aa23.04■■□□□ 1.28
HDAC4-215ENST00000543185 CIZ1Q9ULV3 898 aaPredicted RBP23.03■■□□□ 1.28
HDAC4-215ENST00000543185 STAC3Q96MF2 364 aa23.03■■□□□ 1.28
HDAC4-215ENST00000543185 SUPT6HQ7KZ85 1726 aaKnown RBP23.03■■□□□ 1.28
HDAC4-215ENST00000543185 GIMAP7Q8NHV1 300 aa23.03■■□□□ 1.28
HDAC4-215ENST00000543185 NGDNQ8NEJ9 315 aaKnown RBP23.03■■□□□ 1.28
HDAC4-215ENST00000543185 TEFQ10587 303 aa23.03■■□□□ 1.28
HDAC4-215ENST00000543185 PLIN1O60240 522 aa23.02■■□□□ 1.28
HDAC4-215ENST00000543185 CALCOCO1Q9P1Z2 691 aa23.02■■□□□ 1.28
HDAC4-215ENST00000543185 GNAI1P63096 354 aa23.02■■□□□ 1.28
HDAC4-215ENST00000543185 PPFIBP1Q86W92 1011 aa23.02■■□□□ 1.28
HDAC4-215ENST00000543185 CCDC88BA6NC98 1476 aa23.02■■□□□ 1.28
HDAC4-215ENST00000543185 WDR33Q9C0J8 1336 aaKnown RBP23.01■■□□□ 1.27
HDAC4-215ENST00000543185 CCDC181Q5TID7 509 aa23.01■■□□□ 1.27
HDAC4-215ENST00000543185 GRPEL1Q9HAV7 217 aa22.99■■□□□ 1.27
HDAC4-215ENST00000543185 ST20-MTHFSA0A0A6YYL1 179 aa22.99■■□□□ 1.27
HDAC4-215ENST00000543185 GOLGA6L10A0A0M3HER8 536 aa22.99■■□□□ 1.27
HDAC4-215ENST00000543185 PLCD4Q9BRC7 762 aa22.99■■□□□ 1.27
HDAC4-215ENST00000543185 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.99■■□□□ 1.272e-6■■■□□ 16.7
HDAC4-215ENST00000543185 CCDC7Q96M83 1385 aa22.98■■□□□ 1.27
HDAC4-215ENST00000543185 ZFYVE27Q5T4F4 411 aa22.98■■□□□ 1.27
HDAC4-215ENST00000543185 RRP7AQ9Y3A4 280 aaKnown RBP22.98■■□□□ 1.27
HDAC4-215ENST00000543185 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
HDAC4-215ENST00000543185 CCAR1Q8IX12 1150 aaKnown RBP22.98■■□□□ 1.27
HDAC4-215ENST00000543185 KIF21BO75037 1637 aa22.97■■□□□ 1.27
HDAC4-215ENST00000543185 BCL2L13Q9BXK5 485 aa22.97■■□□□ 1.27
HDAC4-215ENST00000543185 SHTN1A0MZ66 631 aa22.97■■□□□ 1.27
HDAC4-215ENST00000543185 SLC3A2P08195 630 aaKnown RBP22.96■■□□□ 1.27
HDAC4-215ENST00000543185 ESPNB1AK53 854 aa22.96■■□□□ 1.27
HDAC4-215ENST00000543185 CLASRPQ8N2M8 674 aaKnown RBP22.96■■□□□ 1.27
HDAC4-215ENST00000543185 GGT6Q6P531 493 aa22.96■■□□□ 1.27
HDAC4-215ENST00000543185 CNKSR2Q8WXI2 1034 aa22.95■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms