RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	KIF2A	O00139	706 aa	Predicted RBP	10.49	□□□□□ -0.73
YBX3-208	ENST00000540447	RTF1	Q92541	710 aa	Known RBP	10.49	□□□□□ -0.73
YBX3-208	ENST00000540447	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.49	□□□□□ -0.73
YBX3-208	ENST00000540447	IGSF3	O75054	1194 aa		10.49	□□□□□ -0.73
YBX3-208	ENST00000540447	MPHOSPH10	O00566	681 aa	Known RBP	10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	IVL	P07476	585 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	CLASRP	Q8N2M8	674 aa	Known RBP	10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	KIF15	Q9NS87	1388 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	PTPN14	Q15678	1187 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	ZKSCAN2	Q63HK3	967 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	SLC26A8	Q96RN1	970 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	GBP3	Q9H0R5	595 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	RAB3GAP2	Q9H2M9	1393 aa		10.48	□□□□□ -0.73
YBX3-208	ENST00000540447	RNF187	Q5TA31	235 aa	Predicted RBP	10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	INTS3	Q68E01	1043 aa	Known RBP	10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	C10orf67	Q8IYJ2	551 aa		10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	KIF18A	Q8NI77	898 aa		10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	ROCK2	O75116	1388 aa	Known RBP	10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.47	□□□□□ -0.73	3e-16	■■□□□ 13.9
YBX3-208	ENST00000540447	DCAF11	Q8TEB1	546 aa		10.47	□□□□□ -0.73
YBX3-208	ENST00000540447	OLFM4	Q6UX06	510 aa		10.46	□□□□□ -0.73
YBX3-208	ENST00000540447	FAM177A1	Q8N128	213 aa	Predicted RBP	10.46	□□□□□ -0.73
YBX3-208	ENST00000540447	RBM33	Q96EV2	1170 aa	Known RBP	10.46	□□□□□ -0.73
YBX3-208	ENST00000540447	ENOX2	Q16206	610 aa	Known RBP	10.46	□□□□□ -0.73
YBX3-208	ENST00000540447	CWC22	Q9HCG8	908 aa	Known RBP	10.46	□□□□□ -0.73
YBX3-208	ENST00000540447	BCL2L13	Q9BXK5	485 aa		10.46	□□□□□ -0.74
YBX3-208	ENST00000540447		A0A1B0GUL7	405 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	EIF3A	Q14152	1382 aa	Known RBP	10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	OFD1	O75665	1012 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	SETSIP	P0DME0	302 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	ODF2	Q5BJF6	829 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	XRCC6	P12956	609 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	CRACR2A	Q9BSW2	395 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	SYCE3	A1L190	88 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	SDF4	Q9BRK5	362 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	GOLIM4	O00461	696 aa		10.45	□□□□□ -0.74
YBX3-208	ENST00000540447	MYCBP	Q99417	103 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.44	□□□□□ -0.74	2e-15	■□□□□ 9.4
YBX3-208	ENST00000540447	GBP6	Q6ZN66	633 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	MICALL1	Q8N3F8	863 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	SMARCE1	Q969G3	411 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	DDX19B	Q9UMR2	479 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	PRM3	Q9NNZ6	103 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-208	ENST00000540447		K7ELQ4	463 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	CCDC27	Q2M243	656 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	ANO2	Q9NQ90	1003 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	OGFR	Q9NZT2	677 aa		10.44	□□□□□ -0.74
YBX3-208	ENST00000540447	WASHC2A	Q641Q2	1341 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	DRC1	Q96MC2	740 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	RSPH14	Q9UHP6	348 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	FBLN2	P98095	1184 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	DHX57	Q6P158	1386 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	LIG1	P18858	919 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	CDC45	O75419	566 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	RABEP1	Q15276	862 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	FIBP	O43427	364 aa		10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	ZKSCAN1	P17029	563 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-208	ENST00000540447	FEZ1	Q99689	392 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	MRVI1	Q9Y6F6	885 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	LUZP1	Q86V48	1076 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	C16orf45	Q96MC5	204 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	FMNL2	Q96PY5	1086 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	EZR	P15311	586 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	KIN	O60870	393 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	LNPK	Q9C0E8	428 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	WASHC2C	Q9Y4E1	1318 aa		10.42	□□□□□ -0.74
YBX3-208	ENST00000540447	ERLIN2	O94905	339 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	SMARCC1	Q92922	1105 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	TNMD	Q9H2S6	317 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	JAKMIP3	Q5VZ66	844 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	KIF7	Q2M1P5	1343 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	PANK2	Q9BZ23	570 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	FBXO3	Q9UK99	471 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	GOLGA6L10	A0A0M3HER8	536 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	MAP9	Q49MG5	647 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	LRCH2	Q5VUJ6	765 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	MCM2	P49736	904 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	PAXBP1	Q9Y5B6	917 aa		10.41	□□□□□ -0.74
YBX3-208	ENST00000540447	AKNA	Q7Z591	1439 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	RUFY2	Q8WXA3	655 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	CEP164	Q9UPV0	1460 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	IQCE	Q6IPM2	695 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	SLC4A10	Q6U841	1118 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	TAX1BP1	Q86VP1	789 aa		10.4	□□□□□ -0.74
YBX3-208	ENST00000540447	URI1	O94763	535 aa	Predicted RBP	10.4	□□□□□ -0.75
YBX3-208	ENST00000540447	SERPINC1	P01008	464 aa		10.4	□□□□□ -0.75
YBX3-208	ENST00000540447	DZIP1L	Q8IYY4	767 aa	Known RBP	10.4	□□□□□ -0.75
YBX3-208	ENST00000540447	TMX1	Q9H3N1	280 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	CCDC181	Q5TID7	509 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	CERS3	Q8IU89	383 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	WDR66	Q8TBY9	1149 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	CCDC47	Q96A33	483 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	CFAP45	Q9UL16	551 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447		A0A1B0GUA9	196 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	FILIP1L	Q4L180	1135 aa		10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	LRRFIP2	Q9Y608	721 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-208	ENST00000540447	CEP57	Q86XR8	500 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms