RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 DDX12PQ92771 950 aa8.49□□□□□ -1.05
ECHDC1-215ENST00000475319 GMPR2Q9P2T1 348 aaKnown RBP8.49□□□□□ -1.05
ECHDC1-215ENST00000475319 ZBTB7CA1YPR0 619 aa8.48□□□□□ -1.05
ECHDC1-215ENST00000475319 GDF9O60383 454 aa8.48□□□□□ -1.05
ECHDC1-215ENST00000475319 REPIN1Q9BWE0 567 aaKnown RBP8.48□□□□□ -1.05
ECHDC1-215ENST00000475319 SHROOM4Q9ULL8 1493 aa8.48□□□□□ -1.05
ECHDC1-215ENST00000475319 MCM6Q14566 821 aa8.47□□□□□ -1.05
ECHDC1-215ENST00000475319 C6orf132Q5T0Z8 1188 aa8.47□□□□□ -1.05
ECHDC1-215ENST00000475319 TNFRSF10AO00220 468 aa8.46□□□□□ -1.05
ECHDC1-215ENST00000475319 PRIM1P49642 420 aaKnown RBP8.46□□□□□ -1.05
ECHDC1-215ENST00000475319 SAMD7Q7Z3H4 446 aa8.46□□□□□ -1.05
ECHDC1-215ENST00000475319 ZSCAN1Q8NBB4 408 aa8.46□□□□□ -1.05
ECHDC1-215ENST00000475319 NECTIN2Q92692 538 aa8.46□□□□□ -1.05
ECHDC1-215ENST00000475319 UNC13AQ9UPW8 1703 aa8.46□□□□□ -1.06
ECHDC1-215ENST00000475319 PTGDRQ13258 359 aa8.45□□□□□ -1.06
ECHDC1-215ENST00000475319 DACH1Q9UI36 760 aa8.44□□□□□ -1.06
ECHDC1-215ENST00000475319 CCDC9Q9Y3X0 531 aaKnown RBP8.44□□□□□ -1.06
ECHDC1-215ENST00000475319 RNF223E7ERA6 249 aa8.43□□□□□ -1.06
ECHDC1-215ENST00000475319 AXIN1O15169 862 aa8.43□□□□□ -1.06
ECHDC1-215ENST00000475319 SH3D19Q5HYK7 790 aa8.43□□□□□ -1.06
ECHDC1-215ENST00000475319 CCDC136Q96JN2 1154 aa8.43□□□□□ -1.06
ECHDC1-215ENST00000475319 ZNF777Q9ULD5 760 aaPredicted RBP8.43□□□□□ -1.06
ECHDC1-215ENST00000475319 HDGFP51858 240 aaKnown RBP8.42□□□□□ -1.06
ECHDC1-215ENST00000475319 ZNF326Q5BKZ1 582 aaKnown RBP8.42□□□□□ -1.06
ECHDC1-215ENST00000475319 EPAS1Q99814 870 aa8.42□□□□□ -1.06
ECHDC1-215ENST00000475319 BICRAQ9NZM4 1560 aa8.41□□□□□ -1.06
ECHDC1-215ENST00000475319 CTC1Q2NKJ3 1217 aa8.41□□□□□ -1.06
ECHDC1-215ENST00000475319 PROSER2Q86WR7 435 aaPredicted RBP8.41□□□□□ -1.06
ECHDC1-215ENST00000475319 EMID1Q96A84 441 aaPredicted RBP8.41□□□□□ -1.06
ECHDC1-215ENST00000475319 APLP1P51693 650 aa8.4□□□□□ -1.06
ECHDC1-215ENST00000475319 COPS2P61201 443 aa8.4□□□□□ -1.06
ECHDC1-215ENST00000475319 LCE2CQ5TA81 110 aa8.4□□□□□ -1.06
ECHDC1-215ENST00000475319 ANKLE1Q8NAG6 615 aa8.4□□□□□ -1.06
ECHDC1-215ENST00000475319 POM121Q96HA1 1249 aa8.4□□□□□ -1.06
ECHDC1-215ENST00000475319 ZPR1O75312 459 aa8.39□□□□□ -1.07
ECHDC1-215ENST00000475319 DEKP35659 375 aaKnown RBP8.39□□□□□ -1.07
ECHDC1-215ENST00000475319 SLC16A10Q8TF71 515 aa8.39□□□□□ -1.07
ECHDC1-215ENST00000475319 AVPP01185 164 aa8.39□□□□□ -1.07
ECHDC1-215ENST00000475319 FNBP4Q8N3X1 1017 aaPredicted RBP8.39□□□□□ -1.07
ECHDC1-215ENST00000475319 ZCCHC6Q5VYS8 1495 aaKnown RBP8.38□□□□□ -1.07
ECHDC1-215ENST00000475319 CLCN1P35523 988 aa8.38□□□□□ -1.07
ECHDC1-215ENST00000475319 AAMPQ13685 434 aa8.38□□□□□ -1.07
ECHDC1-215ENST00000475319 SKIV2LQ15477 1246 aaKnown RBP8.38□□□□□ -1.07
ECHDC1-215ENST00000475319 BRD2P25440 801 aaKnown RBP8.37□□□□□ -1.07
ECHDC1-215ENST00000475319 MDM2Q00987 491 aaPredicted RBP8.37□□□□□ -1.07
ECHDC1-215ENST00000475319 DIEXFQ68CQ4 756 aaKnown RBP8.37□□□□□ -1.07
ECHDC1-215ENST00000475319 CECR2Q9BXF3 1484 aa8.37□□□□□ -1.07
ECHDC1-215ENST00000475319 LIAT1Q6ZQX7 453 aa8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 PROCA1Q8NCQ7 364 aaPredicted RBP8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 PHOX2BQ99453 314 aa8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 CDHR5Q9HBB8 845 aa8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 GPCPD1Q9NPB8 672 aa8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 ATP1B4Q9UN42 357 aaPredicted RBP8.36□□□□□ -1.07
ECHDC1-215ENST00000475319 RNF40O75150 1001 aa8.35□□□□□ -1.07
ECHDC1-215ENST00000475319 SSTR3P32745 418 aaPredicted RBP8.35□□□□□ -1.07
ECHDC1-215ENST00000475319 SMCPP49901 116 aaPredicted RBP8.35□□□□□ -1.07
ECHDC1-215ENST00000475319 CCDC97Q96F63 343 aaPredicted RBP8.35□□□□□ -1.07
ECHDC1-215ENST00000475319 SERPINA10Q9UK55 444 aa8.35□□□□□ -1.07
ECHDC1-215ENST00000475319 RAD21O60216 631 aa8.34□□□□□ -1.07
ECHDC1-215ENST00000475319 KCTD17Q8N5Z5 321 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 BEGAINQ9BUH8 593 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 TRAIPQ9BWF2 469 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 SENP2Q9HC62 589 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 NPDC1Q9NQX5 325 aaPredicted RBP8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 POLR3EQ9NVU0 708 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 TSKSQ9UJT2 592 aa8.34□□□□□ -1.08
ECHDC1-215ENST00000475319 SUPT16HQ9Y5B9 1047 aaKnown RBP8.33□□□□□ -1.08
ECHDC1-215ENST00000475319 SCRIBQ14160 1630 aa8.32□□□□□ -1.08
ECHDC1-215ENST00000475319 CC2D2AQ9P2K1 1620 aa8.32□□□□□ -1.08
ECHDC1-215ENST00000475319 FANCIQ9NVI1 1328 aa8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 LORP23490 312 aaPredicted RBP8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 EN1Q05925 392 aaPredicted RBP8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 RSPH4AQ5TD94 716 aa8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 COG6Q9Y2V7 657 aa8.3□□□□□ -1.08
ECHDC1-215ENST00000475319 SPDYE5A6NIY4 337 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 SMAPO00193 183 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 MAP3K7O43318 606 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 RBM10P98175 930 aaKnown RBP8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 FOXC1Q12948 553 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 AEBP1Q8IUX7 1158 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 RBM33Q96EV2 1170 aaKnown RBP8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 FAM217BQ9NTX9 383 aaPredicted RBP8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 EIF4G1Q04637 1599 aaKnown RBP8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 KCNMA1Q12791 1236 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 MYSM1Q5VVJ2 828 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 NLRP7Q8WX94 980 aa8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 CDK11AQ9UQ88 783 aaPredicted RBP8.29□□□□□ -1.08
ECHDC1-215ENST00000475319 SNRPBP14678 240 aaKnown RBP8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 GMPRP36959 345 aa8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 FAM161AQ3B820 660 aa8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 CCER1Q8TC90 406 aaPredicted RBP8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 PRR14Q9BWN1 585 aa8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 SNRKQ9NRH2 765 aa8.28□□□□□ -1.08
ECHDC1-215ENST00000475319 CYP4X1Q8N118 509 aa8.27□□□□□ -1.09
ECHDC1-215ENST00000475319 RETREG2Q8NC44 543 aa8.27□□□□□ -1.09
ECHDC1-215ENST00000475319 TRIM47Q96LD4 638 aa8.27□□□□□ -1.09
ECHDC1-215ENST00000475319 PKD2L1Q9P0L9 805 aa8.27□□□□□ -1.09
ECHDC1-215ENST00000475319 A0A0U1RQG5 324 aaPredicted RBP8.26□□□□□ -1.09
ECHDC1-215ENST00000475319 NBPF26B4DH59 902 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms