RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 ANTXR1Q9H6X2 564 aa6.48□□□□□ -1.37
HERC4-205ENST00000412272 GUCY2CP25092 1073 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 RBM28Q9NW13 759 aaKnown RBP6.47□□□□□ -1.37
HERC4-205ENST00000412272 IBTKQ9P2D0 1353 aaPredicted RBP6.47□□□□□ -1.37
HERC4-205ENST00000412272 KIF1CO43896 1103 aaKnown RBP6.47□□□□□ -1.37
HERC4-205ENST00000412272 GABPB1Q06547 395 aaPredicted RBP6.47□□□□□ -1.37
HERC4-205ENST00000412272 C11orf91Q3C1V1 193 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 C8orf34Q49A92 452 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 TSPAN18Q96SJ8 248 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 KLHL33A6NCF5 533 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 PDE3BQ13370 1112 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 ICE2Q659A1 982 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 PPP1R9BQ96SB3 815 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 RAD50Q92878 1312 aa6.47□□□□□ -1.37
HERC4-205ENST00000412272 FAM161AQ3B820 660 aa6.46□□□□□ -1.37
HERC4-205ENST00000412272 BRMS1Q9HCU9 246 aa6.46□□□□□ -1.37
HERC4-205ENST00000412272 MED4Q9NPJ6 270 aa6.46□□□□□ -1.37
HERC4-205ENST00000412272 MRVI1Q9Y6F6 885 aa6.46□□□□□ -1.37
HERC4-205ENST00000412272 NINLQ9Y2I6 1382 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 MKL1Q969V6 931 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 COQ9O75208 318 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 HS1BP3Q53T59 392 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 EXOC8Q8IYI6 725 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 UNC13AQ9UPW8 1703 aa6.46□□□□□ -1.38
HERC4-205ENST00000412272 INHBEP58166 350 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 CCT2P78371 535 aaKnown RBP6.45□□□□□ -1.38
HERC4-205ENST00000412272 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.45□□□□□ -1.383e-6■■■□□ 17.4
HERC4-205ENST00000412272 PANK3Q9H999 370 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.45□□□□□ -1.38
HERC4-205ENST00000412272 CALCOCO1Q9P1Z2 691 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 RSPH14Q9UHP6 348 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 SPDYE4A6NLX3 237 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 POLD1P28340 1107 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 AQRO60306 1485 aaKnown RBP eCLIP6.45□□□□□ -1.381e-10■□□□□ 10.5
HERC4-205ENST00000412272 TDO2P48775 406 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 TNPO1Q92973 898 aaKnown RBP6.45□□□□□ -1.38
HERC4-205ENST00000412272 KIAA1107Q9UPP5 1409 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 SCP2P22307 547 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 SUFUQ9UMX1 484 aa6.45□□□□□ -1.38
HERC4-205ENST00000412272 GTF2F1P35269 517 aaKnown RBP eCLIP6.44□□□□□ -1.383e-9■□□□□ 10.1
HERC4-205ENST00000412272 TSGA10IPQ3SY00 556 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 JARID2Q92833 1246 aaPredicted RBP6.44□□□□□ -1.38
HERC4-205ENST00000412272 MRS2Q9HD23 443 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 SHROOM2Q13796 1616 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 CTR9Q6PD62 1173 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 MYRIPQ8NFW9 859 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 THOC2Q8NI27 1593 aaKnown RBP6.44□□□□□ -1.38
HERC4-205ENST00000412272 DENND4BO75064 1496 aaPredicted RBP6.44□□□□□ -1.38
HERC4-205ENST00000412272 PPP1R12AO14974 1030 aaPredicted RBP6.44□□□□□ -1.38
HERC4-205ENST00000412272 SWT1Q5T5J6 900 aaKnown RBP6.44□□□□□ -1.38
HERC4-205ENST00000412272 SLC26A8Q96RN1 970 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 CUX1P39880 1505 aa6.44□□□□□ -1.38
HERC4-205ENST00000412272 MPHOSPH10O00566 681 aaKnown RBP6.43□□□□□ -1.38
HERC4-205ENST00000412272 MSNP26038 577 aaKnown RBP6.43□□□□□ -1.38
HERC4-205ENST00000412272 BIRC2Q13490 618 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 MYBPC2Q14324 1141 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 CLASP1Q7Z460 1538 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 RBM5P52756 815 aaKnown RBP eCLIP6.43□□□□□ -1.38
HERC4-205ENST00000412272 DDX46Q7L014 1031 aaKnown RBP6.43□□□□□ -1.38
HERC4-205ENST00000412272 JMYQ8N9B5 988 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 PIK3R5Q8WYR1 880 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 USP19O94966 1318 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 CCDC173Q0VFZ6 552 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 FAM210AQ96ND0 272 aa6.43□□□□□ -1.38
HERC4-205ENST00000412272 NOL10Q9BSC4 688 aaKnown RBP6.43□□□□□ -1.38
HERC4-205ENST00000412272 HSPA5P11021 654 aaKnown RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 XPCQ01831 940 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 CENPQQ7L2Z9 268 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 TMX1Q9H3N1 280 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 TNNT1P13805 278 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 SETDB1Q15047 1291 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 EXOC6Q8TAG9 804 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 GZF1Q9H116 711 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 CXorf56Q9H5V9 222 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.42□□□□□ -1.381e-6■■■■■ 140.1
HERC4-205ENST00000412272 NOL7Q9UMY1 257 aaKnown RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 BRD4O60885 1362 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 TNNT3P45378 269 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 GSCP56915 257 aaPredicted RBP6.42□□□□□ -1.38
HERC4-205ENST00000412272 NBPF3Q9H094 633 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 NCOA3Q9Y6Q9 1424 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 TEX14Q8IWB6 1497 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 CSPP1Q1MSJ5 1256 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 LRCH2Q5VUJ6 765 aa6.42□□□□□ -1.38
HERC4-205ENST00000412272 MBD5Q9P267 1494 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 KIF14Q15058 1648 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 FAM163BP0C2L3 166 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 KDM5CP41229 1560 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 BLMP54132 1417 aaPredicted RBP6.41□□□□□ -1.38
HERC4-205ENST00000412272 TERF2Q15554 542 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 UVSSAQ2YD98 709 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 BCORL1Q5H9F3 1711 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 SPTY2D1Q68D10 685 aaPredicted RBP6.41□□□□□ -1.38
HERC4-205ENST00000412272 TSC1Q92574 1164 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 FAM212AQ96EL1 285 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 RAD51AP2Q09MP3 1159 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 MAP9Q49MG5 647 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 GAS2L3Q86XJ1 694 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 SDR16C5Q8N3Y7 309 aa6.41□□□□□ -1.38
HERC4-205ENST00000412272 MNS1Q8NEH6 495 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms