RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 MCTP1Q6DN14 999 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 TCEAL9Q9UHQ7 104 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 GCC1Q96CN9 775 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 HMGXB3Q12766 1538 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 PES1O00541 588 aaKnown RBP10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 XBP1P17861 261 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 LTV1Q96GA3 475 aaPredicted RBP10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 IFT140Q96RY7 1462 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 MBD3O95983 291 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 EVA1CP58658 441 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 BICD2Q8TD16 824 aa10.11□□□□□ -0.79
SPTLC3-201ENST00000399002 TIAM1Q13009 1591 aa10.1□□□□□ -0.79
SPTLC3-201ENST00000399002 OLFM4Q6UX06 510 aa10.1□□□□□ -0.79
SPTLC3-201ENST00000399002 ERCC4Q92889 916 aaPredicted RBP10.1□□□□□ -0.79
SPTLC3-201ENST00000399002 KIAA1107Q9UPP5 1409 aa10.1□□□□□ -0.79
SPTLC3-201ENST00000399002 DAPK1P53355 1430 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 GAS2L2Q8NHY3 880 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 TSPYL4Q9UJ04 414 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 MINK1Q8N4C8 1332 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 PLIN1O60240 522 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 GNAI3P08754 354 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 NUTM2DQ5VT03 806 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 CTDP1Q9Y5B0 961 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 PDIA4P13667 645 aaKnown RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 PCMTD1Q96MG8 357 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 MYO6Q9UM54 1294 aa10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 FOXD4L5Q5VV16 416 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 FOXD4L4Q8WXT5 416 aaPredicted RBP10.09□□□□□ -0.79
SPTLC3-201ENST00000399002 PIP4K2AP48426 406 aaPredicted RBP10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 PDE3AQ14432 1141 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 NFXL1Q6ZNB6 911 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 MRC2Q9UBG0 1479 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 CCDC30Q5VVM6 783 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 CWC22Q9HCG8 908 aaKnown RBP10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 RABEP1Q15276 862 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 ZNF771Q7L3S4 317 aaPredicted RBP10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 RAD54L2Q9Y4B4 1467 aa10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 FKBP5Q13451 457 aaPredicted RBP10.08□□□□□ -0.8
SPTLC3-201ENST00000399002 RUFY1Q96T51 708 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 ARAP1Q96P48 1450 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 CUL7Q14999 1698 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 FAM43AQ8N2R8 423 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 HOMER1Q86YM7 354 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 PNISRQ8TF01 805 aaKnown RBP10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 UBTFL1P0CB47 393 aaPredicted RBP10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 PDCP20941 246 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 CCDC173Q0VFZ6 552 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 AEBP1Q8IUX7 1158 aa10.07□□□□□ -0.8
SPTLC3-201ENST00000399002 ZNF396Q96N95 335 aaPredicted RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 BCL2L13Q9BXK5 485 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 RPGRIP1LQ68CZ1 1315 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 PSME1Q06323 249 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 RALYLQ86SE5 291 aaKnown RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 VPS37DQ86XT2 251 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 TXLNBQ8N3L3 684 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 CFTRP13569 1480 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 CCDC141Q6ZP82 1450 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 CWC15Q9P013 229 aaKnown RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 C9orf84Q5VXU9 1444 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 DHX16O60231 1041 aaKnown RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 RDXP35241 583 aaKnown RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 CCAR2Q8N163 923 aaKnown RBP10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 MNS1Q8NEH6 495 aa10.06□□□□□ -0.8
SPTLC3-201ENST00000399002 ANKRD1Q15327 319 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 EIF2S2P20042 333 aaKnown RBP10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 WDR63Q8IWG1 891 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 SART3Q15020 963 aaKnown RBP10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 SYNJ1O43426 1573 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 APPP05067 770 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 SMARCE1Q969G3 411 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 TSPY26PQ9H489 355 aa10.05□□□□□ -0.8
SPTLC3-201ENST00000399002 SLC3A2P08195 630 aaKnown RBP10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 ZNF592Q92610 1267 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 DNMBPQ6XZF7 1577 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 GPRASP1Q5JY77 1395 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 AQRO60306 1485 aaKnown RBP eCLIP10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 ERBINQ96RT1 1412 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 DACH1Q9UI36 760 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 RAPGEF4Q8WZA2 1011 aa10.04□□□□□ -0.8
SPTLC3-201ENST00000399002 CCT4P50991 539 aaKnown RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 ARID3AQ99856 593 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 SRCIN1Q9C0H9 1055 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 PRM3Q9NNZ6 103 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 POLA1P09884 1462 aaPredicted RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 MAP3K1Q13233 1512 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 NASPP49321 788 aaPredicted RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 VPS37CA5D8V6 355 aaPredicted RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 ELL2O00472 640 aaPredicted RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 PPP2R1AP30153 589 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 DCTN1Q14203 1278 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 CAVIN1Q6NZI2 390 aaKnown RBP10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 TBC1D2BQ9UPU7 963 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 HSP90B2PQ58FF3 399 aa10.03□□□□□ -0.8
SPTLC3-201ENST00000399002 HMGN5P82970 282 aaKnown RBP10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 PLEKHO1Q53GL0 409 aaPredicted RBP10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 TROQ12816 1431 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms