RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RGPD8O14715 1765 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-202ENST00000394943 EIF3AQ14152 1382 aaKnown RBP10.11□□□□□ -0.79
LIMA1-202ENST00000394943 COL16A1Q07092 1604 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-202ENST00000394943 BRD4O60885 1362 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-202ENST00000394943 ZNF335Q9H4Z2 1342 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-202ENST00000394943 ROBO1Q9Y6N7 1651 aa10.1□□□□□ -0.79
LIMA1-202ENST00000394943 ABCA3Q99758 1704 aa10.1□□□□□ -0.79
LIMA1-202ENST00000394943 AMOTL2Q9Y2J4 779 aa10.1□□□□□ -0.79
LIMA1-202ENST00000394943 ANKRD26Q9UPS8 1709 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 SLC24A1O60721 1099 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 ROCK2O75116 1388 aaKnown RBP10.09□□□□□ -0.79
LIMA1-202ENST00000394943 PHRF1Q9P1Y6 1649 aaKnown RBP10.09□□□□□ -0.79
LIMA1-202ENST00000394943 TMEM94Q12767 1356 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 RGL3Q3MIN7 710 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 TESK2Q96S53 571 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 PLEKHH1Q9ULM0 1364 aa10.09□□□□□ -0.79
LIMA1-202ENST00000394943 NINLQ9Y2I6 1382 aa10.08□□□□□ -0.8
LIMA1-202ENST00000394943 CCER1Q8TC90 406 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-202ENST00000394943 CD163L1Q9NR16 1453 aa10.08□□□□□ -0.8
LIMA1-202ENST00000394943 SSH2Q76I76 1423 aa10.08□□□□□ -0.8
LIMA1-202ENST00000394943 NBPF1Q3BBV0 1214 aa10.08□□□□□ -0.8
LIMA1-202ENST00000394943 C1orf167Q5SNV9 1468 aa10.07□□□□□ -0.8
LIMA1-202ENST00000394943 POLR3AO14802 1390 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-202ENST00000394943 CHGAP10645 457 aaKnown RBP10.07□□□□□ -0.8
LIMA1-202ENST00000394943 ZEB1P37275 1124 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-202ENST00000394943 PXDNQ92626 1479 aa10.07□□□□□ -0.8
LIMA1-202ENST00000394943 SLC26A8Q96RN1 970 aa10.06□□□□□ -0.8
LIMA1-202ENST00000394943 CPSF1Q10570 1443 aaKnown RBP10.06□□□□□ -0.8
LIMA1-202ENST00000394943 USP47Q96K76 1375 aa10.06□□□□□ -0.8
LIMA1-202ENST00000394943 ABCC6O95255 1503 aa10.05□□□□□ -0.8
LIMA1-202ENST00000394943 NEUROD1Q13562 356 aa10.04□□□□□ -0.8
LIMA1-202ENST00000394943 CERKQ8TCT0 537 aa10.04□□□□□ -0.8
LIMA1-202ENST00000394943 C19orf44Q9H6X5 657 aa10.04□□□□□ -0.8
LIMA1-202ENST00000394943 KIF20BQ96Q89 1820 aa10.03□□□□□ -0.8
LIMA1-202ENST00000394943 CENPJQ9HC77 1338 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-202ENST00000394943 PHLPP1O60346 1717 aa10.03□□□□□ -0.8
LIMA1-202ENST00000394943 MSH6P52701 1360 aa10.02□□□□□ -0.8
LIMA1-202ENST00000394943 NUTM2DQ5VT03 806 aaPredicted RBP10.02□□□□□ -0.81
LIMA1-202ENST00000394943 SLIT3O75094 1523 aa10.02□□□□□ -0.81
LIMA1-202ENST00000394943 PIK3C2AO00443 1686 aa10.01□□□□□ -0.81
LIMA1-202ENST00000394943 TMEM132EQ6IEE7 984 aa10.01□□□□□ -0.81
LIMA1-202ENST00000394943 PLPPR3Q6T4P5 718 aa10.01□□□□□ -0.81
LIMA1-202ENST00000394943 PLEKHG3A1L390 1219 aa10.01□□□□□ -0.81
LIMA1-202ENST00000394943 ATAD2Q6PL18 1390 aa10□□□□□ -0.81
LIMA1-202ENST00000394943 WASLO00401 505 aaPredicted RBP10□□□□□ -0.81
LIMA1-202ENST00000394943 KDM2AQ9Y2K7 1162 aa10□□□□□ -0.81
LIMA1-202ENST00000394943 SBNO1A3KN83 1393 aa10□□□□□ -0.81
LIMA1-202ENST00000394943 TNKS1BP1Q9C0C2 1729 aaKnown RBP10□□□□□ -0.81
LIMA1-202ENST00000394943 PRAM1Q96QH2 718 aa10□□□□□ -0.81
LIMA1-202ENST00000394943 PRR36Q9H6K5 1346 aa9.99□□□□□ -0.81
LIMA1-202ENST00000394943 CADPS2Q86UW7 1296 aa9.98□□□□□ -0.81
LIMA1-202ENST00000394943 CARD11Q9BXL7 1154 aa9.98□□□□□ -0.81
LIMA1-202ENST00000394943 DISP3Q9P2K9 1392 aa9.98□□□□□ -0.81
LIMA1-202ENST00000394943 CAMTA1Q9Y6Y1 1673 aa9.97□□□□□ -0.81
LIMA1-202ENST00000394943 PROSER2Q86WR7 435 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-202ENST00000394943 COL18A1P39060 1754 aa9.97□□□□□ -0.81
LIMA1-202ENST00000394943 NPC1L1Q9UHC9 1359 aa9.97□□□□□ -0.81
LIMA1-202ENST00000394943 SOS2Q07890 1332 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-202ENST00000394943 WAPLQ7Z5K2 1190 aa9.96□□□□□ -0.81
LIMA1-202ENST00000394943 USP31Q70CQ4 1352 aa9.96□□□□□ -0.81
LIMA1-202ENST00000394943 LMO7Q8WWI1 1683 aa9.96□□□□□ -0.81
LIMA1-202ENST00000394943 EVC2Q86UK5 1308 aa9.96□□□□□ -0.82
LIMA1-202ENST00000394943 NWD2Q9ULI1 1742 aa9.96□□□□□ -0.82
LIMA1-202ENST00000394943 NRAPQ86VF7 1730 aa9.95□□□□□ -0.82
LIMA1-202ENST00000394943 USP6P35125 1406 aa9.95□□□□□ -0.82
LIMA1-202ENST00000394943 ANKRD36BQ8N2N9 1353 aa9.95□□□□□ -0.82
LIMA1-202ENST00000394943 TRAK1Q9UPV9 953 aa9.95□□□□□ -0.82
LIMA1-202ENST00000394943 NFAT5O94916 1531 aa9.94□□□□□ -0.82
LIMA1-202ENST00000394943 EIF4G2P78344 907 aaKnown RBP eCLIP9.94□□□□□ -0.82
LIMA1-202ENST00000394943 EDC4Q6P2E9 1401 aaKnown RBP9.94□□□□□ -0.82
LIMA1-202ENST00000394943 PPIP5K1Q6PFW1 1433 aa9.93□□□□□ -0.82
LIMA1-202ENST00000394943 ST20-MTHFSA0A0A6YYL1 179 aa9.93□□□□□ -0.82
LIMA1-202ENST00000394943 HSPA5P11021 654 aaKnown RBP9.93□□□□□ -0.82
LIMA1-202ENST00000394943 SMG6Q86US8 1419 aaKnown RBP9.93□□□□□ -0.82
LIMA1-202ENST00000394943 FAM208AQ9UK61 1670 aaKnown RBP9.93□□□□□ -0.82
LIMA1-202ENST00000394943 FBXO41Q8TF61 875 aa9.93□□□□□ -0.82
LIMA1-202ENST00000394943 CCDC7Q96M83 1385 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 WNK3Q9BYP7 1800 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 BRINP3Q76B58 766 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 CDK19Q9BWU1 502 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 SLAIN2Q9P270 581 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 PLCH1Q4KWH8 1693 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 OVOS2A0A0J9YW53 1432 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 OVOS2Q6IE36 1432 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 PHF23Q9BUL5 403 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-202ENST00000394943 TNS3Q68CZ2 1445 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 CDCA8Q53HL2 280 aa9.92□□□□□ -0.82
LIMA1-202ENST00000394943 USP19O94966 1318 aa9.91□□□□□ -0.82
LIMA1-202ENST00000394943 COL14A1Q05707 1796 aaKnown RBP9.91□□□□□ -0.82
LIMA1-202ENST00000394943 TOM1O60784 492 aa9.91□□□□□ -0.82
LIMA1-202ENST00000394943 TMF1P82094 1093 aa9.9□□□□□ -0.82
LIMA1-202ENST00000394943 CCDC61Q9Y6R9 512 aa9.9□□□□□ -0.82
LIMA1-202ENST00000394943 NSD2O96028 1365 aa9.9□□□□□ -0.82
LIMA1-202ENST00000394943 NUDT16Q96DE0 195 aaKnown RBP9.9□□□□□ -0.82
LIMA1-202ENST00000394943 ILDR1Q86SU0 546 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-202ENST00000394943 POGKQ9P215 609 aa9.89□□□□□ -0.83
LIMA1-202ENST00000394943 TTC21AQ8NDW8 1320 aa9.89□□□□□ -0.83
LIMA1-202ENST00000394943 STK26Q9P289 416 aa9.89□□□□□ -0.83
LIMA1-202ENST00000394943 RGPD1P0DJD0 1748 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 SCAF1Q9H7N4 1312 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms