RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 PSME1Q06323 249 aa11.8□□□□□ -0.52
CHD3-202ENST00000358181 L3MBTL2Q969R5 705 aa11.8□□□□□ -0.52
CHD3-202ENST00000358181 IFIT2P09913 472 aaKnown RBP11.8□□□□□ -0.52
CHD3-202ENST00000358181 NUTM2GQ5VZR2 741 aa11.8□□□□□ -0.52
CHD3-202ENST00000358181 H0YHG0 523 aa11.8□□□□□ -0.52
CHD3-202ENST00000358181 ZMYND15Q9H091 742 aa11.8□□□□□ -0.52
CHD3-202ENST00000358181 MINK1Q8N4C8 1332 aaPredicted RBP11.8□□□□□ -0.52
CHD3-202ENST00000358181 TEX35Q5T0J7 233 aa11.79□□□□□ -0.52
CHD3-202ENST00000358181 TAX1BP1Q86VP1 789 aa11.79□□□□□ -0.52
CHD3-202ENST00000358181 GRIPAP1Q4V328 841 aa11.79□□□□□ -0.52
CHD3-202ENST00000358181 ANKRD45Q5TZF3 282 aa11.79□□□□□ -0.52
CHD3-202ENST00000358181 BRMS1Q9HCU9 246 aa11.79□□□□□ -0.52
CHD3-202ENST00000358181 DRC1Q96MC2 740 aa11.78□□□□□ -0.52
CHD3-202ENST00000358181 COMMD10Q9Y6G5 202 aa11.78□□□□□ -0.52
CHD3-202ENST00000358181 LRRFIP1Q32MZ4 808 aaKnown RBP11.78□□□□□ -0.52
CHD3-202ENST00000358181 DCTN1Q14203 1278 aa11.78□□□□□ -0.52
CHD3-202ENST00000358181 ZSCAN29Q8IWY8 852 aaPredicted RBP11.78□□□□□ -0.52
CHD3-202ENST00000358181 BBXQ8WY36 941 aaPredicted RBP11.78□□□□□ -0.52
CHD3-202ENST00000358181 RBM42Q9BTD8 480 aaKnown RBP11.78□□□□□ -0.52
CHD3-202ENST00000358181 CHMP4AQ9BY43 222 aa11.78□□□□□ -0.52
CHD3-202ENST00000358181 SMARCA2P51531 1590 aa11.77□□□□□ -0.52
CHD3-202ENST00000358181 SAFBQ15424 915 aaKnown RBP eCLIP11.77□□□□□ -0.52
CHD3-202ENST00000358181 ANKRD18AQ8IVF6 992 aa11.77□□□□□ -0.53
CHD3-202ENST00000358181 PMFBP1Q8TBY8 1022 aa11.77□□□□□ -0.53
CHD3-202ENST00000358181 MYO6Q9UM54 1294 aa11.77□□□□□ -0.53
CHD3-202ENST00000358181 DNAJC2Q99543 621 aaKnown RBP11.76□□□□□ -0.53
CHD3-202ENST00000358181 STRN4Q9NRL3 753 aa11.76□□□□□ -0.53
CHD3-202ENST00000358181 VPS37CA5D8V6 355 aaPredicted RBP11.76□□□□□ -0.53
CHD3-202ENST00000358181 CLASRPQ8N2M8 674 aaKnown RBP11.76□□□□□ -0.53
CHD3-202ENST00000358181 IPO9Q96P70 1041 aaKnown RBP11.76□□□□□ -0.53
CHD3-202ENST00000358181 HOMER2Q9NSB8 354 aa11.76□□□□□ -0.53
CHD3-202ENST00000358181 TANGO6Q9C0B7 1094 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 CENPHQ9H3R5 247 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 NF2P35240 595 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 JPH4Q96JJ6 628 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 TSPYL1Q9H0U9 437 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 ANKRD30AQ9BXX3 1397 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 PANK3Q9H999 370 aa11.75□□□□□ -0.53
CHD3-202ENST00000358181 MRPS9P82933 396 aaKnown RBP11.74□□□□□ -0.53
CHD3-202ENST00000358181 MNS1Q8NEH6 495 aa11.74□□□□□ -0.53
CHD3-202ENST00000358181 PDS5BQ9NTI5 1447 aa11.74□□□□□ -0.53
CHD3-202ENST00000358181 OLFM4Q6UX06 510 aa11.74□□□□□ -0.53
CHD3-202ENST00000358181 PIBF1Q8WXW3 757 aa11.74□□□□□ -0.53
CHD3-202ENST00000358181 MAGEC2Q9UBF1 373 aaPredicted RBP11.74□□□□□ -0.53
CHD3-202ENST00000358181 DDX23Q9BUQ8 820 aaKnown RBP11.73□□□□□ -0.53
CHD3-202ENST00000358181 ST20-MTHFSA0A0A6YYL1 179 aa11.73□□□□□ -0.53
CHD3-202ENST00000358181 GBP2P32456 591 aaPredicted RBP11.73□□□□□ -0.53
CHD3-202ENST00000358181 ATF3P18847 181 aa11.73□□□□□ -0.53
CHD3-202ENST00000358181 RIC3Q7Z5B4 369 aa11.73□□□□□ -0.53
CHD3-202ENST00000358181 TERF2IPQ9NYB0 399 aa11.73□□□□□ -0.53
CHD3-202ENST00000358181 G3BP1Q13283 466 aaKnown RBP eCLIP11.73□□□□□ -0.53
CHD3-202ENST00000358181 SASS6Q6UVJ0 657 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 ZNF219Q9P2Y4 722 aaPredicted RBP11.72□□□□□ -0.53
CHD3-202ENST00000358181 CRBNQ96SW2 442 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 DDX49Q9Y6V7 483 aaKnown RBP11.72□□□□□ -0.53
CHD3-202ENST00000358181 VPS8Q8N3P4 1428 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 ANAPC15P60006 121 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 RALYLQ86SE5 291 aaKnown RBP11.72□□□□□ -0.53
CHD3-202ENST00000358181 LIG1P18858 919 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 WASHC2AQ641Q2 1341 aa11.72□□□□□ -0.53
CHD3-202ENST00000358181 E9PSI1 815 aa11.71□□□□□ -0.53
CHD3-202ENST00000358181 IFT57Q9NWB7 429 aa11.71□□□□□ -0.53
CHD3-202ENST00000358181 EZRP15311 586 aaKnown RBP11.71□□□□□ -0.53
CHD3-202ENST00000358181 CCDC181Q5TID7 509 aa11.71□□□□□ -0.54
CHD3-202ENST00000358181 VTI1AQ96AJ9 217 aa11.71□□□□□ -0.54
CHD3-202ENST00000358181 AXDND1Q5T1B0 1012 aaPredicted RBP11.71□□□□□ -0.54
CHD3-202ENST00000358181 BICDL1Q6ZP65 573 aa11.71□□□□□ -0.54
CHD3-202ENST00000358181 ZNF76P36508 570 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 CCDC112Q8NEF3 446 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 HSP90B2PQ58FF3 399 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 NOM1Q5C9Z4 860 aaKnown RBP11.7□□□□□ -0.54
CHD3-202ENST00000358181 SERPINA10Q9UK55 444 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 RUSC2Q8N2Y8 1516 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 FAM193AP78312 1265 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 PRDM2Q13029 1718 aa11.7□□□□□ -0.54
CHD3-202ENST00000358181 SPINK5Q9NQ38 1064 aaPredicted RBP11.7□□□□□ -0.54
CHD3-202ENST00000358181 DESP17661 470 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 SSBP05455 408 aaKnown RBP eCLIP11.69□□□□□ -0.54
CHD3-202ENST00000358181 ZKSCAN1P17029 563 aaPredicted RBP11.69□□□□□ -0.54
CHD3-202ENST00000358181 XBP1P17861 261 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 TRIM21P19474 475 aaKnown RBP11.69□□□□□ -0.54
CHD3-202ENST00000358181 COG3Q96JB2 828 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 ACBD3Q9H3P7 528 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 RFX1P22670 979 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 KIF6Q6ZMV9 814 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 RAPGEF2Q9Y4G8 1499 aa11.69□□□□□ -0.54
CHD3-202ENST00000358181 HSP90AA2PQ14568 343 aaPredicted RBP11.68□□□□□ -0.54
CHD3-202ENST00000358181 WDHD1O75717 1129 aaPredicted RBP11.68□□□□□ -0.54
CHD3-202ENST00000358181 RUFY2Q8WXA3 655 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 NLRP2Q9NX02 1062 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 ERLIN2O94905 339 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 RSPH6AQ9H0K4 717 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 CENPJQ9HC77 1338 aaPredicted RBP11.68□□□□□ -0.54
CHD3-202ENST00000358181 USP5P45974 858 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 ZNF354CQ86Y25 554 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 HMOX1P09601 288 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 TRMT1LQ7Z2T5 733 aaKnown RBP11.68□□□□□ -0.54
CHD3-202ENST00000358181 CEP63Q96MT8 703 aa11.68□□□□□ -0.54
CHD3-202ENST00000358181 EIF3AQ14152 1382 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms