RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 SMG6Q86US8 1419 aaKnown RBP4.38□□□□□ -1.71
SYNE1-201ENST00000341594 KIF20AO95235 890 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 COG6Q9Y2V7 657 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 KCTD19Q17RG1 926 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-201ENST00000341594 MTMR7Q9Y216 660 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 MCTP1Q6DN14 999 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 CIZ1Q9ULV3 898 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-201ENST00000341594 HMGXB3Q12766 1538 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 PPP1R15AO75807 674 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-201ENST00000341594 TPM3P06753 285 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 ATXN8OSP0DMR3 200 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 KANK4Q5T7N3 995 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-201ENST00000341594 TICAM2Q86XR7 235 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 PANK2Q9BZ23 570 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 MLECQ14165 292 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 C1orf115Q9H7X2 142 aa4.37□□□□□ -1.71
SYNE1-201ENST00000341594 REREQ9P2R6 1566 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 UHRF1BP1LA0JNW5 1464 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 PRPF40AO75400 957 aaKnown RBP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 ANKRD45Q5TZF3 282 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 SAMD1Q6SPF0 538 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 XPCQ01831 940 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 IBTKQ9P2D0 1353 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 ATP2B1P20020 1258 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 PIBF1Q8WXW3 757 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 CAVIN2O95810 425 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 CGNL1Q0VF96 1302 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 PLEKHA4Q9H4M7 779 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 V9GYY5 206 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-201ENST00000341594 ARHGEF12Q9NZN5 1544 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 TNNQ9UQP3 1299 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 FMNL2Q96PY5 1086 aa4.36□□□□□ -1.71
SYNE1-201ENST00000341594 SEC24BO95487 1268 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 EIF4G2P78344 907 aaKnown RBP eCLIP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 ANKRD65E5RJM6 399 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 FGD1P98174 961 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 RPAINQ86UA6 219 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 RAD21O60216 631 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 TEX14Q8IWB6 1497 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 CT47B1P0C2W7 299 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 EIF4E1BA6NMX2 242 aaKnown RBP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 EIF2AK4Q9P2K8 1649 aaKnown RBP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 TRMT1Q9NXH9 659 aaKnown RBP4.35□□□□□ -1.71
SYNE1-201ENST00000341594 CCDC88AQ3V6T2 1871 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 CLGNO14967 610 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 PTPN21Q16825 1174 aa4.35□□□□□ -1.71
SYNE1-201ENST00000341594 SMARCA5O60264 1052 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 GOLGA6L4A6NEF3 574 aa4.34□□□□□ -1.71
SYNE1-201ENST00000341594 NUMA1Q14980 2115 aa4.34□□□□□ -1.71
SYNE1-201ENST00000341594 GOLGA4Q13439 2230 aaKnown RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 AXDND1Q5T1B0 1012 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 BIN2Q9UBW5 565 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 MCCP23508 829 aa4.34□□□□□ -1.71
SYNE1-201ENST00000341594 DDX11L8A8MPP1 907 aa4.34□□□□□ -1.71
SYNE1-201ENST00000341594 ECM2O94769 699 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 ATP2C2O75185 946 aa4.34□□□□□ -1.71
SYNE1-201ENST00000341594 SRPK2P78362 688 aaKnown RBP4.34□□□□□ -1.71
SYNE1-201ENST00000341594 KSR1Q8IVT5 923 aa4.34□□□□□ -1.72
SYNE1-201ENST00000341594 C16orf71Q8IYS4 520 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-201ENST00000341594 FNBP4Q8N3X1 1017 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-201ENST00000341594 TONSLQ96HA7 1378 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 CAMK4Q16566 473 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 LMNB2Q03252 620 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 ZNF330Q9Y3S2 320 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 OS9Q13438 667 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 BRD4O60885 1362 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 DYNC1I1O14576 645 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 TACO1Q9BSH4 297 aaKnown RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 BCAR3O75815 825 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 CCDC88CQ9P219 2028 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 SERPINA10Q9UK55 444 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 MYO5CQ9NQX4 1742 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 FAM161AQ3B820 660 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 MYH16Q9H6N6 1097 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 TUBBP07437 444 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 RAB11FIP4Q86YS3 637 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 COBLO75128 1261 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 MSNP26038 577 aaKnown RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 NUTM2GQ5VZR2 741 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 CCDC88BA6NC98 1476 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 CDK5RAP2Q96SN8 1893 aa4.33□□□□□ -1.72
SYNE1-201ENST00000341594 RBM42Q9BTD8 480 aaKnown RBP4.33□□□□□ -1.72
SYNE1-201ENST00000341594 MTUS2Q5JR59 1369 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 MRE11P49959 708 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 GTPBP4Q9BZE4 634 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 TFIP11Q9UBB9 837 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 MROH2BQ7Z745 1585 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 SNAPC4Q5SXM2 1469 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 GDPD2Q9HCC8 539 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 MARCH10Q8NA82 808 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 NCOA2Q15596 1464 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 EIF2S2P20042 333 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 NOM1Q5C9Z4 860 aaKnown RBP4.32□□□□□ -1.72
SYNE1-201ENST00000341594 FAM184AQ8NB25 1140 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 PDILTQ8N807 584 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 CC2D2BQ6DHV5 1058 aa4.32□□□□□ -1.72
SYNE1-201ENST00000341594 SLC4A10Q6U841 1118 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms