RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NPATQ14207 1427 aa27.48■■□□□ 1.99
TRIM28-201ENST00000253024 PCDHB15Q9Y5E8 787 aa27.47■■□□□ 1.99
TRIM28-201ENST00000253024 MAP3K4Q9Y6R4 1608 aa27.46■■□□□ 1.99
TRIM28-201ENST00000253024 RARSP54136 660 aaKnown RBP27.46■■□□□ 1.99
TRIM28-201ENST00000253024 SLKQ9H2G2 1235 aaPredicted RBP27.46■■□□□ 1.99
TRIM28-201ENST00000253024 MROH2AA6NES4 1674 aa27.46■■□□□ 1.99
TRIM28-201ENST00000253024 INSRP06213 1382 aa27.45■■□□□ 1.98
TRIM28-201ENST00000253024 IDI1Q13907 227 aa27.45■■□□□ 1.98
TRIM28-201ENST00000253024 CGNL1Q0VF96 1302 aa27.44■■□□□ 1.98
TRIM28-201ENST00000253024 FRAT2O75474 233 aaPredicted RBP27.43■■□□□ 1.98
TRIM28-201ENST00000253024 CFAP53Q96M91 514 aa27.43■■□□□ 1.98
TRIM28-201ENST00000253024 PPRC1Q5VV67 1664 aaKnown RBP27.42■■□□□ 1.98
TRIM28-201ENST00000253024 MROH1Q8NDA8 1641 aa27.42■■□□□ 1.98
TRIM28-201ENST00000253024 CD109Q6YHK3 1445 aa27.42■■□□□ 1.98
TRIM28-201ENST00000253024 ARXQ96QS3 562 aa27.42■■□□□ 1.98
TRIM28-201ENST00000253024 INO80Q9ULG1 1556 aaPredicted RBP27.42■■□□□ 1.98
TRIM28-201ENST00000253024 FBXO31Q5XUX0 539 aaPredicted RBP27.41■■□□□ 1.98
TRIM28-201ENST00000253024 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.41■■□□□ 1.98
TRIM28-201ENST00000253024 NPC1L1Q9UHC9 1359 aa27.4■■□□□ 1.98
TRIM28-201ENST00000253024 POGKQ9P215 609 aa27.39■■□□□ 1.98
TRIM28-201ENST00000253024 MLECQ14165 292 aa27.39■■□□□ 1.97
TRIM28-201ENST00000253024 DEPDC5O75140 1603 aa27.38■■□□□ 1.97
TRIM28-201ENST00000253024 EFCAB6Q5THR3 1501 aa27.38■■□□□ 1.97
TRIM28-201ENST00000253024 EVC2Q86UK5 1308 aa27.38■■□□□ 1.97
TRIM28-201ENST00000253024 KIF1BO60333 1816 aa27.37■■□□□ 1.97
TRIM28-201ENST00000253024 FTSJ3Q8IY81 847 aaKnown RBP27.37■■□□□ 1.97
TRIM28-201ENST00000253024 STAG3Q9UJ98 1225 aa27.37■■□□□ 1.97
TRIM28-201ENST00000253024 POLR3AO14802 1390 aaPredicted RBP27.37■■□□□ 1.97
TRIM28-201ENST00000253024 PRAM1Q96QH2 718 aa27.36■■□□□ 1.97
TRIM28-201ENST00000253024 EXOSC9Q06265 439 aaKnown RBP27.36■■□□□ 1.97
TRIM28-201ENST00000253024 KIDINS220Q9ULH0 1771 aa27.36■■□□□ 1.97
TRIM28-201ENST00000253024 BRPF3Q9ULD4 1205 aa27.35■■□□□ 1.97
TRIM28-201ENST00000253024 ABCA9Q8IUA7 1624 aa27.35■■□□□ 1.97
TRIM28-201ENST00000253024 SMC4Q9NTJ3 1288 aa27.34■■□□□ 1.97
TRIM28-201ENST00000253024 PDZRN3Q9UPQ7 1066 aa27.34■■□□□ 1.97
TRIM28-201ENST00000253024 PDE3AQ14432 1141 aa27.34■■□□□ 1.97
TRIM28-201ENST00000253024 VWDEQ8N2E2 1590 aa27.33■■□□□ 1.97
TRIM28-201ENST00000253024 MYOM2P54296 1465 aa27.33■■□□□ 1.97
TRIM28-201ENST00000253024 VGFO15240 615 aaPredicted RBP27.33■■□□□ 1.96
TRIM28-201ENST00000253024 ZNF518AQ6AHZ1 1483 aa27.33■■□□□ 1.96
TRIM28-201ENST00000253024 SLC24A1O60721 1099 aa27.31■■□□□ 1.96
TRIM28-201ENST00000253024 OSCARQ8IYS5 282 aa27.31■■□□□ 1.96
TRIM28-201ENST00000253024 ELL2O00472 640 aaPredicted RBP27.31■■□□□ 1.96
TRIM28-201ENST00000253024 ITPRIPQ8IWB1 547 aa27.31■■□□□ 1.96
TRIM28-201ENST00000253024 THUMPD2Q9BTF0 503 aaKnown RBP27.3■■□□□ 1.96
TRIM28-201ENST00000253024 HMOX1P09601 288 aa27.27■■□□□ 1.96
TRIM28-201ENST00000253024 WAPLQ7Z5K2 1190 aa27.27■■□□□ 1.96
TRIM28-201ENST00000253024 MAPK8IP3Q9UPT6 1336 aa27.27■■□□□ 1.96
TRIM28-201ENST00000253024 USP19O94966 1318 aa27.27■■□□□ 1.96
TRIM28-201ENST00000253024 CABP1Q9NZU7 370 aa27.27■■□□□ 1.96
TRIM28-201ENST00000253024 A0A1W2PP64 1363 aa27.26■■□□□ 1.95
TRIM28-201ENST00000253024 RIPK4P57078 832 aa27.25■■□□□ 1.95
TRIM28-201ENST00000253024 CYB5RLQ6IPT4 315 aa27.25■■□□□ 1.95
TRIM28-201ENST00000253024 SSH1Q8WYL5 1049 aa27.24■■□□□ 1.95
TRIM28-201ENST00000253024 MYH16Q9H6N6 1097 aa27.24■■□□□ 1.95
TRIM28-201ENST00000253024 GSE1Q14687 1217 aa27.24■■□□□ 1.95
TRIM28-201ENST00000253024 ARAP3Q8WWN8 1544 aa27.24■■□□□ 1.95
TRIM28-201ENST00000253024 FYB1O15117 783 aa27.23■■□□□ 1.95
TRIM28-201ENST00000253024 TMPOP42166 694 aaKnown RBP27.22■■□□□ 1.95
TRIM28-201ENST00000253024 USP35Q9P2H5 1018 aa27.22■■□□□ 1.95
TRIM28-201ENST00000253024 ADGRB3O60242 1522 aa27.22■■□□□ 1.95
TRIM28-201ENST00000253024 MFAP1P55081 439 aaKnown RBP27.21■■□□□ 1.95
TRIM28-201ENST00000253024 DZIP1LQ8IYY4 767 aaKnown RBP27.21■■□□□ 1.95
TRIM28-201ENST00000253024 NOB1Q9ULX3 412 aaKnown RBP27.21■■□□□ 1.95
TRIM28-201ENST00000253024 POGZQ7Z3K3 1410 aa27.21■■□□□ 1.95
TRIM28-201ENST00000253024 QRICH2Q9H0J4 1663 aa27.21■■□□□ 1.95
TRIM28-201ENST00000253024 ZKSCAN2Q63HK3 967 aa27.21■■□□□ 1.95
TRIM28-201ENST00000253024 WDR63Q8IWG1 891 aa27.21■■□□□ 1.95
TRIM28-201ENST00000253024 TRIM27P14373 513 aa27.21■■□□□ 1.95
TRIM28-201ENST00000253024 NCKAP5LQ9HCH0 1330 aa27.2■■□□□ 1.94
TRIM28-201ENST00000253024 NUTM2FA1L443 756 aa27.2■■□□□ 1.94
TRIM28-201ENST00000253024 PLPPR3Q6T4P5 718 aa27.19■■□□□ 1.94
TRIM28-201ENST00000253024 ZRANB1Q9UGI0 708 aa27.19■■□□□ 1.94
TRIM28-201ENST00000253024 TRIM35Q9UPQ4 493 aa27.19■■□□□ 1.94
TRIM28-201ENST00000253024 SBNO2Q9Y2G9 1366 aa27.19■■□□□ 1.94
TRIM28-201ENST00000253024 PMFBP1Q8TBY8 1022 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 CDK19Q9BWU1 502 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 YEATS2Q9ULM3 1422 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 MVPQ14764 893 aaKnown RBP27.18■■□□□ 1.94
TRIM28-201ENST00000253024 C1orf115Q9H7X2 142 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 ADGRB1O14514 1584 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 FRMPD1Q5SYB0 1578 aa27.18■■□□□ 1.94
TRIM28-201ENST00000253024 ANKRD36BQ8N2N9 1353 aa27.17■■□□□ 1.94
TRIM28-201ENST00000253024 NRXN1Q9ULB1 1477 aa27.17■■□□□ 1.94
TRIM28-201ENST00000253024 RWDD1Q9H446 243 aaPredicted RBP27.16■■□□□ 1.94
TRIM28-201ENST00000253024 KIAA1210Q9ULL0 1709 aa27.16■■□□□ 1.94
TRIM28-201ENST00000253024 TULP4Q9NRJ4 1543 aa27.16■■□□□ 1.94
TRIM28-201ENST00000253024 SOX12O15370 315 aa27.15■■□□□ 1.94
TRIM28-201ENST00000253024 TMEM57Q8N5G2 664 aa27.15■■□□□ 1.94
TRIM28-201ENST00000253024 PHF23Q9BUL5 403 aaPredicted RBP27.14■■□□□ 1.94
TRIM28-201ENST00000253024 SHPRHQ149N8 1683 aa27.13■■□□□ 1.93
TRIM28-201ENST00000253024 DIAPH1O60610 1272 aaKnown RBP27.13■■□□□ 1.93
TRIM28-201ENST00000253024 PRKAR2BP31323 418 aa27.13■■□□□ 1.93
TRIM28-201ENST00000253024 ABCC3O15438 1527 aa27.12■■□□□ 1.93
TRIM28-201ENST00000253024 RPGRIP1LQ68CZ1 1315 aa27.12■■□□□ 1.93
TRIM28-201ENST00000253024 UPF2Q9HAU5 1272 aaKnown RBP27.12■■□□□ 1.93
TRIM28-201ENST00000253024 TERF2IPQ9NYB0 399 aa27.12■■□□□ 1.93
TRIM28-201ENST00000253024 NGEFQ8N5V2 710 aa27.12■■□□□ 1.93
TRIM28-201ENST00000253024 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.11■■□□□ 1.93
TRIM28-201ENST00000253024 LNPKQ9C0E8 428 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms