RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ARFGAP1Q8N6T3 406 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 LINC01599Q8WXQ3 324 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 EXOC4Q96A65 974 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 UROC1Q96N76 676 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 TBCBQ99426 244 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 GOLGA6AQ9NYA3 693 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 C9IYK1 514 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 TULP2O00295 520 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 PIK3R2O00459 728 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 ENPP3O14638 875 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 PAPSS1O43252 624 aaPredicted RBP17.63■□□□□ 0.41
LDLR-206ENST00000557958 PTPN1P18031 435 aaKnown RBP17.63■□□□□ 0.41
LDLR-206ENST00000557958 IL1R2P27930 398 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 CLCNKBP51801 687 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 EIF3BP55884 814 aaKnown RBP17.63■□□□□ 0.41
LDLR-206ENST00000557958 BOLA3Q53S33 107 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 ZDHHC24Q6UX98 284 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 SCUBE3Q8IX30 993 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 CMASQ8NFW8 434 aaPredicted RBP17.63■□□□□ 0.41
LDLR-206ENST00000557958 PCSK1NQ9UHG2 260 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 ADAM21Q9UKJ8 722 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 DRG1Q9Y295 367 aaKnown RBP17.63■□□□□ 0.41
LDLR-206ENST00000557958 ATP8A1Q9Y2Q0 1164 aa17.63■□□□□ 0.41
LDLR-206ENST00000557958 CASTOR2A6NHX0 329 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 C3orf70A6NLC5 250 aaPredicted RBP17.62■□□□□ 0.41
LDLR-206ENST00000557958 ODC1P11926 461 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 PCSK1P29120 753 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 RDXP35241 583 aaKnown RBP17.62■□□□□ 0.41
LDLR-206ENST00000557958 FLT3P36888 993 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 ADCY8P40145 1251 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 PTPN9P43378 593 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 PMS2P54278 862 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 TAZQ16635 292 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 TCTN1Q2MV58 587 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 KCNT1Q5JUK3 1230 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 EFHC1Q5JVL4 640 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 CEP128Q6ZU80 1094 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 BBS12Q6ZW61 710 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 FAM76AQ8TAV0 307 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 TEKT4Q8WW24 435 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 RIN2Q8WYP3 895 aaPredicted RBP17.62■□□□□ 0.41
LDLR-206ENST00000557958 MAK16Q9BXY0 300 aaKnown RBP17.62■□□□□ 0.41
LDLR-206ENST00000557958 DUSP16Q9BY84 665 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 FAM204AQ9H8W3 233 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 DDX43Q9NXZ2 648 aaKnown RBP17.62■□□□□ 0.41
LDLR-206ENST00000557958 LRFN2Q9ULH4 789 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 ZNF148Q9UQR1 794 aa17.62■□□□□ 0.41
LDLR-206ENST00000557958 GRAP2O75791 330 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 NPR3P17342 541 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 VCPP55072 806 aaKnown RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 PLCB3Q01970 1234 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 PDK2Q15119 407 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 OSTM1Q86WC4 334 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 METTL23Q86XA0 190 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 VSIG1Q86XK7 387 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 PIK3R5Q8WYR1 880 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 HSPH1Q92598 858 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 NKD2Q969F2 451 aaPredicted RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 ACSF2Q96CM8 615 aaPredicted RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 MED10Q9BTT4 135 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 DSEQ9UL01 958 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 TBX21Q9UL17 535 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 PCDHB7Q9Y5E2 793 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 MKI67P46013 3256 aaKnown RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 HCRTO43612 131 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 ITGAVP06756 1048 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 MYZAPP0CAP1 466 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 TUSC3Q13454 348 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 TFDP2Q14188 446 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 UPP1Q16831 310 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 CDO1Q16878 200 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 CCDC14Q49A88 953 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 ANKS1BQ7Z6G8 1248 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 CROCCP2Q86T23 111 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 FAM172AQ8WUF8 416 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 PIWIL1Q96J94 861 aaKnown RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 CFAP57Q96MR6 1250 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 SYT15Q9BQS2 421 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 CALN1Q9BXU9 219 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 TXLNGYQ9BZA5 131 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 PABPC3Q9H361 631 aaKnown RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 NGRNQ9NPE2 291 aaKnown RBP17.61■□□□□ 0.41
LDLR-206ENST00000557958 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.61■□□□□ 0.41
LDLR-206ENST00000557958 CDH9Q9ULB4 789 aa17.61■□□□□ 0.41
LDLR-206ENST00000557958 TRIM43BA6NCK2 446 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 CST8O60676 142 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 EOMESO95936 686 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 KRT14P02533 472 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 FAM200BP0CF97 657 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 LCP1P13796 627 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 RAG1P15918 1043 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 ATP11AP98196 1134 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 IFFO1Q0D2I5 559 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 KRT81Q14533 505 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 UAP1Q16222 522 aaPredicted RBP17.6■□□□□ 0.41
LDLR-206ENST00000557958 CEP85LQ5SZL2 805 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 DENND2CQ68D51 928 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 GLB1LQ6UWU2 654 aa17.6■□□□□ 0.41
LDLR-206ENST00000557958 ZNF598Q86UK7 904 aaKnown RBP17.6■□□□□ 0.41
LDLR-206ENST00000557958 RFX6Q8HWS3 928 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms