RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	GABBR2	O75899	941 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	SNUPN	O95149	360 aa	Known RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	TRUB2	O95900	331 aa	Known RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	ITGAV	P06756	1048 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	KRT16	P08779	473 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	PDGFRB	P09619	1106 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	ABL2	P42684	1182 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	STAT4	Q14765	748 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	MTHFD1L	Q6UB35	978 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	TRABD2A	Q86V40	505 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	NIPA2	Q8N8Q9	360 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	MPHOSPH6	Q99547	160 aa	Known RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	GOLGA2P5	Q9HBQ8	144 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	STRIP2	Q9ULQ0	834 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	UPP2	O95045	317 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	SNAI1	O95863	264 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	LINGO3	P0C6S8	592 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	TAC1	P20366	129 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	PPP6R3	Q5H9R7	873 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	TTC30A	Q86WT1	665 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	CCDC134	Q9H6E4	229 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	PCDH9	Q9HC56	1237 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	DDX56	Q9NY93	547 aa	Known RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	NKIRAS1	Q9NYS0	192 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	LGALS13	Q9UHV8	139 aa		15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	XPO7	Q9UIA9	1087 aa	Known RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	FARP1	Q9Y4F1	1045 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX55-209	ENST00000542286	PDHX	O00330	501 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	LIN7A	O14910	233 aa	Predicted RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	MED7	O43513	233 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	GAS2	O43903	313 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	SMPD1	P17405	629 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	EPHX2	P34913	555 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	HADH	Q16836	314 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	C3orf62	Q6ZUJ4	267 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	BBS12	Q6ZW61	710 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	FITM2	Q8N6M3	262 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	BBOF1	Q8ND07	529 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	FBF1	Q8TES7	1133 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	OSMR	Q99650	979 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CCDC77	Q9BR77	488 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	NSRP1	Q9H0G5	558 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	LHX5	Q9H2C1	402 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	USP15	Q9Y4E8	981 aa	Predicted RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286		A6NHS1	94 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	FAM155B	O75949	473 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	RNF8	O76064	485 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	IL18RAP	O95256	599 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	ATP2A2	P16615	1042 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CA4	P22748	312 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	LMNB2	Q03252	620 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	MORF4L2	Q15014	288 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	DARS2	Q6PI48	645 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CENPU	Q71F23	418 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CROCCP2	Q86T23	111 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	AGGF1	Q8N302	714 aa	eCLIP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	ANKLE1	Q8NAG6	615 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	PYROXD1	Q8WU10	500 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	ACAP3	Q96P50	834 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	MROH8	Q9H579	483 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	UBN1	Q9NPG3	1134 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	DRG1	Q9Y295	367 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	MYO18A	Q92614	2054 aa	Known RBP	15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	CIT	O14578	2027 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	DOCK3	Q8IZD9	2030 aa		15.42	■□□□□ 0.06
DDX55-209	ENST00000542286	KRT7	P08729	469 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	KRT4	P19013	534 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	COPS2	P61201	443 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	GRIK4	Q16099	956 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	GALNTL6	Q49A17	601 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	SPATA21	Q7Z572	469 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	SLC10A4	Q96EP9	437 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	MCRS1	Q96EZ8	462 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	NXF3	Q9H4D5	531 aa	Known RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	MFHAS1	Q9Y4C4	1052 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	FAM47DP	A6NHR8	397 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	ALOX15B	O15296	676 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	OAS1	P00973	400 aa	Known RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	HMGCR	P04035	888 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	MCF2	P10911	925 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	CCDC130	P13994	396 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	ADORA2B	P29275	332 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	MSH2	P43246	934 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	ZNF200	P98182	395 aa	Predicted RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	HIC1	Q14526	733 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	DRICH1	Q6PGQ1	229 aa	Predicted RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	LINC01465	Q8N7H1	131 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	NAT8L	Q8N9F0	302 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	GPRC5A	Q8NFJ5	357 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	KCNV2	Q8TDN2	545 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	PIH1D1	Q9NWS0	290 aa	Known RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	ZFAT	Q9P243	1243 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	RABGEF1	Q9UJ41	708 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	LAMA2	P24043	3122 aa	Known RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286		H7C0C1	242 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	TCEA3	O75764	348 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	LUC7L3	O95232	432 aa	Known RBP	15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	ATP5O	P48047	213 aa		15.41	■□□□□ 0.06
DDX55-209	ENST00000542286	BNIP1	Q12981	228 aa		15.41	■□□□□ 0.06

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