RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SSH3Q8TE77 659 aa6.93□□□□□ -1.3
VPS50-212ENST00000476413 OSCP1Q8WVF1 389 aa6.93□□□□□ -1.3
VPS50-212ENST00000476413 UBXN10Q96LJ8 280 aa6.93□□□□□ -1.3
VPS50-212ENST00000476413 HIST1H2AAQ96QV6 131 aa6.93□□□□□ -1.3
VPS50-212ENST00000476413 GJD2Q9UKL4 321 aa6.93□□□□□ -1.3
VPS50-212ENST00000476413 J3KTA2 159 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 NCAM2O15394 837 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SH3BP5O60239 455 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 CCNT2O60583 730 aaKnown RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 TAF5LO75529 589 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 ACTL6BO94805 426 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 VNN1O95497 513 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SRGAP2BP0DMP2 458 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SRGNP10124 158 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 CST5P28325 142 aaPredicted RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 RBL1P28749 1068 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 PRKAR1BP31321 381 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 ALDH18A1P54886 795 aaKnown RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 TIRAPP58753 221 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 PLP2Q04941 152 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 USP39Q53GS9 565 aaKnown RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 SPDYAQ5MJ70 313 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 KLHL17Q6TDP4 642 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 MAVSQ7Z434 540 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 DTX2Q86UW9 622 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SLC44A2Q8IWA5 706 aaPredicted RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 IZUMO1Q8IYV9 350 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 METTL25Q8N6Q8 603 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 CHST13Q8NET6 341 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 MYCBPAPQ8TBZ2 947 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SPPL3Q8TCT6 385 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 PNISRQ8TF01 805 aaKnown RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 SLC25A43Q8WUT9 341 aaPredicted RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 RSC1A1Q92681 617 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 TRIM63Q969Q1 353 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 GRAMD1AQ96CP6 724 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 HAPLN3Q96S86 360 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 RTKNQ9BST9 563 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 TPSD1Q9BZJ3 242 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 UBA5Q9GZZ9 404 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SMPD4Q9NXE4 827 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 LZTS1Q9Y250 596 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 SLC27A6Q9Y2P4 619 aa6.92□□□□□ -1.3
VPS50-212ENST00000476413 LRRFIP2Q9Y608 721 aaKnown RBP6.92□□□□□ -1.3
VPS50-212ENST00000476413 ARID1BQ8NFD5 2236 aaPredicted RBP6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A18PA6NE21 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A16PA6NEW6 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A9PA6NNJ1 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A5PA8MXJ8 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 IRAK2O43187 625 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 PROM1O43490 865 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 RHOP08100 348 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A15PP0C7V4 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM90A14PP0C7W9 464 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 LAG3P18627 525 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 EPHA3P29320 983 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 MAPK9P45984 424 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 SF3B3Q15393 1217 aaKnown RBP6.91□□□□□ -1.3
VPS50-212ENST00000476413 TRIM60Q495X7 471 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 RHOUQ7L0Q8 258 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 HERC6Q8IVU3 1022 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 LNX2Q8N448 690 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 IL17REQ8NFR9 667 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 ABHD5Q8WTS1 349 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 ATRIPQ8WXE1 791 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 FAM167BQ9BTA0 163 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 VN1R3Q9BXE9 311 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 PARPBPQ9NWS1 579 aa6.91□□□□□ -1.3
VPS50-212ENST00000476413 CENPVL1A0A0U1RR11 272 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 VWC2LB2RUY7 222 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 EIF3FO00303 357 aaPredicted RBP6.9□□□□□ -1.3
VPS50-212ENST00000476413 AGR2O95994 175 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 C1SP09871 688 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 CKMT1AP12532 417 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 ADD2P35612 726 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 PRKAA2P54646 552 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 POLE2P56282 527 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 AP2B1P63010 937 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 FBXO47Q5MNV8 452 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 VWA1Q6PCB0 445 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 ARHGEF19Q8IW93 802 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 SIMC1Q8NDZ2 872 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 CACTINQ8WUQ7 758 aaKnown RBP6.9□□□□□ -1.3
VPS50-212ENST00000476413 SOCS4Q8WXH5 440 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 ASB10Q8WXI3 467 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 GLG1Q92896 1179 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 NUDT22Q9BRQ3 303 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 C1QTNF3Q9BXJ4 246 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 INO80BQ9C086 356 aaPredicted RBP6.9□□□□□ -1.3
VPS50-212ENST00000476413 RAPGEFL1Q9UHV5 662 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 FEM1BQ9UK73 627 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 DAPP1Q9UN19 280 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 FZD1Q9UP38 647 aa6.9□□□□□ -1.3
VPS50-212ENST00000476413 DRG1Q9Y295 367 aaKnown RBP6.9□□□□□ -1.3
VPS50-212ENST00000476413 WDR27A2RRH5 827 aa6.89□□□□□ -1.31
VPS50-212ENST00000476413 ZSCAN9O15535 394 aaPredicted RBP6.89□□□□□ -1.31
VPS50-212ENST00000476413 MTAPQ13126 283 aa6.89□□□□□ -1.31
VPS50-212ENST00000476413 CLCA4Q14CN2 919 aa6.89□□□□□ -1.31
VPS50-212ENST00000476413 ACOX1Q15067 660 aa6.89□□□□□ -1.31
VPS50-212ENST00000476413 BTBD16Q32M84 506 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms