RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 ANXA13P27216 316 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ATICP31939 592 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 CASP14P31944 242 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 PRKCIP41743 596 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ACOT2P49753 483 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 MXI1P50539 228 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 FXR1P51114 621 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS41-211ENST00000466017 RAB27AP51159 221 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 YARSP54577 528 aaKnown RBP5.89□□□□□ -1.47
VPS41-211ENST00000466017 DLG4P78352 724 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 MEA1Q16626 185 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SGSM1Q2NKQ1 1148 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 GAB4Q2WGN9 574 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 CBWD6Q4V339 395 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 FAM47CQ5HY64 1035 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 CBWD3Q5JTY5 395 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 CBWD5Q5RIA9 395 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 UBXN11Q5T124 520 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 TCERG1LQ5VWI1 586 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SLC23A3Q6PIS1 610 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 TMTC1Q8IUR5 882 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 CCDC170Q8IYT3 715 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 PHACTR4Q8IZ21 702 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SPC24Q8NBT2 197 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 FBXL13Q8NEE6 735 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ZSWIM2Q8NEG5 633 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 TMEM40Q8WWA1 233 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 TAF4BQ92750 862 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SAAL1Q96ER3 474 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SCLT1Q96NL6 688 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 SLC9A7Q96T83 725 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 DNAJC7Q99615 494 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 FTHL17Q9BXU8 183 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ELAC1Q9H777 363 aaKnown RBP5.89□□□□□ -1.47
VPS41-211ENST00000466017 UBN1Q9NPG3 1134 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 RBAKQ9NYW8 714 aaPredicted RBP5.89□□□□□ -1.47
VPS41-211ENST00000466017 PPT2Q9UMR5 302 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ST3GAL5Q9UNP4 418 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 ZKSCAN5Q9Y2L8 839 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 GIT1Q9Y2X7 761 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 BZW2Q9Y6E2 419 aaKnown RBP5.89□□□□□ -1.47
VPS41-211ENST00000466017 FRMPD3Q5JV73 1810 aa5.89□□□□□ -1.47
VPS41-211ENST00000466017 LACTBL1A8MY62 500 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 PES1O00541 588 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 ARHGAP6O43182 974 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 XPOTO43592 962 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 CXCL10P02778 98 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TUBB4AP04350 444 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ZSCAN20P17040 1043 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 TNNI1P19237 187 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 VAMP1P23763 118 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TPP2P29144 1249 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 THPOP40225 353 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 MATR3P43243 847 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS41-211ENST00000466017 KIR3DL1P43629 444 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 GCLMP48507 274 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 JAM2P57087 298 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CCZ1BP86790 482 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CCZ1P86791 482 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 MYL7Q01449 175 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 GCNT1Q02742 428 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 LPIN1Q14693 890 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 DCAF17Q5H9S7 520 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 ZNF618Q5T7W0 954 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CDCP2Q5VXM1 449 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 PDXDC1Q6P996 788 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TRIM65Q6PJ69 517 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CYP26C1Q6V0L0 522 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ZNF662Q6ZS27 426 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TRAPPC11Q7Z392 1133 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TMEM139Q8IV31 216 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 THNSL1Q8IYQ7 743 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 HACE1Q8IYU2 909 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 KIAA1524Q8TCG1 905 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 APBB2Q92870 758 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CCDC127Q96BQ5 260 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 PGBD4Q96DM1 585 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ANKRD36BP1Q96IX9 119 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 CPB2Q96IY4 423 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ZNF668Q96K58 619 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 LSM14BQ9BX40 385 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 TRPV6Q9H1D0 765 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 AGO3Q9H9G7 860 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 KCNK12Q9HB15 430 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 PDE11AQ9HCR9 933 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 RGS18Q9NS28 235 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TOPORSQ9NS56 1045 aaPredicted RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 C1orf112Q9NSG2 853 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ABHD10Q9NUJ1 306 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 TRMT13Q9NUP7 481 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 ZNHIT6Q9NWK9 470 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 ANKFY1Q9P2R3 1169 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 APEX2Q9UBZ4 518 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 PADI3Q9ULW8 664 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 UBQLN1Q9UMX0 589 aaKnown RBP5.88□□□□□ -1.47
VPS41-211ENST00000466017 CNTN6Q9UQ52 1028 aa5.88□□□□□ -1.47
VPS41-211ENST00000466017 ANO9A1A5B4 782 aa5.87□□□□□ -1.47
VPS41-211ENST00000466017 C9IYK1 514 aa5.87□□□□□ -1.47
VPS41-211ENST00000466017 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.87□□□□□ -1.47
VPS41-211ENST00000466017 EPHB6O15197 1021 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms