RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 DENND4BO75064 1496 aaPredicted RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 KDM6BO15054 1643 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 GCC2Q8IWJ2 1684 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 PRAMEF33A0A0G2JMD5 474 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 CCER2I3L3R5 266 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 PROM1O43490 865 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 PRAMEF10O60809 474 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 HAUS5O94927 633 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 CSTBP04080 98 aaKnown RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 CHRM2P08172 466 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 PPFIA1Q13136 1202 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 PMS2P11Q13670 270 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 C3orf38Q5JPI3 329 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 UTP14CQ5TAP6 766 aaKnown RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 PPP1R3BQ86XI6 285 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 CELF5Q8N6W0 485 aaKnown RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 MSLNLQ96KJ4 702 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 MRGPRX1Q96LB2 322 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 SENP7Q9BQF6 1050 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 ZHX3Q9H4I2 956 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 MAP3K20Q9NYL2 800 aaKnown RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 CTTNBP2NLQ9P2B4 639 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 AFF4Q9UHB7 1163 aaKnown RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 FBXO9Q9UK97 447 aaPredicted RBP4.84□□□□□ -1.63
VPS29-202ENST00000447578 ADAM21Q9UKJ8 722 aa4.84□□□□□ -1.63
VPS29-202ENST00000447578 DNMT1P26358 1616 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 KDM5BQ9UGL1 1544 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 GPATCH8Q9UKJ3 1502 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 CAMSAP2Q08AD1 1489 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 LINC00473A8K010 186 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 TBC1D4O60343 1298 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 PLA2G6O60733 806 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 CELA2AP08217 269 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 HSPA5P11021 654 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 KCNA2P16389 499 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 WT1P19544 449 aaPredicted RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 EN2P19622 333 aaPredicted RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 PRDX5P30044 214 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 KCNJ5P48544 419 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 HNRNPMP52272 730 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS29-202ENST00000447578 CTXN1P60606 82 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 MPEG1Q2M385 716 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 LVRNQ6Q4G3 990 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 CLNKQ7Z7G1 428 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 ANKRD18AQ8IVF6 992 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 NLGN4YQ8NFZ3 816 aaPredicted RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 OR6B3Q8NGW1 331 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 MYCBPAPQ8TBZ2 947 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 TNPO1Q92973 898 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 LRIG1Q96JA1 1093 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 TBATAQ96M53 351 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 P2RX7Q99572 595 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 TMX4Q9H1E5 349 aaPredicted RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 MRPL46Q9H2W6 279 aaKnown RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 GJB4Q9NTQ9 266 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 SAGE1Q9NXZ1 904 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 ZNF70Q9UC06 446 aaPredicted RBP4.83□□□□□ -1.64
VPS29-202ENST00000447578 GPR52Q9Y2T5 361 aa4.83□□□□□ -1.64
VPS29-202ENST00000447578 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS29-202ENST00000447578 ANKRD30BQ9BXX2 1392 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 AOX1Q06278 1338 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 A0A1W2PPC4 97 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 CCDC151A5D8V7 595 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 VWC2LB2RUY7 222 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 NT5C1B-RDH14C9J2C7 533 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 PRRT4C9JH25 899 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 F2RL2O00254 374 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 GRM6O15303 877 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 ORC4O43929 436 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 SKAP2O75563 359 aaPredicted RBP4.82□□□□□ -1.64
VPS29-202ENST00000447578 AGR2O95994 175 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 AHSGP02765 367 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 HDCP19113 662 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 EEF1GP26641 437 aaKnown RBP4.82□□□□□ -1.64
VPS29-202ENST00000447578 ITPKBP27987 946 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 ALDH9A1P49189 494 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 SOX8P57073 446 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 RPS7P62081 194 aaKnown RBP4.82□□□□□ -1.64
VPS29-202ENST00000447578 MC2RQ01718 297 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 FOXD4Q12950 439 aaPredicted RBP4.82□□□□□ -1.64
VPS29-202ENST00000447578 DYRK1AQ13627 763 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 TXNRD1Q16881 649 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 JAKMIP3Q5VZ66 844 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 ZNF425Q6IV72 752 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 PTF1AQ7RTS3 328 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 HASPINQ8TF76 798 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 KBTBD7Q8WVZ9 684 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 MUL1Q969V5 352 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 GCC1Q96CN9 775 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 MPP4Q96JB8 637 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 KLHL32Q96NJ5 620 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 SERHLQ9NQF3 203 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 STK32BQ9NY57 414 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 COL20A1Q9P218 1284 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 MYO1AQ9UBC5 1043 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 SLC45A2Q9UMX9 530 aa4.82□□□□□ -1.64
VPS29-202ENST00000447578 ATP10BO94823 1461 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 ANKRD30AQ9BXX3 1397 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 M0R3H8 397 aa4.81□□□□□ -1.64
VPS29-202ENST00000447578 BTN3A1O00481 513 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms