RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MED10Q9BTT4 135 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 GTPBP4Q9BZE4 634 aaKnown RBP20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 DNAI2Q9GZS0 605 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 DMAP1Q9NPF5 467 aaPredicted RBP20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 RMND1Q9NWS8 449 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 MYH10P35580 1976 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 ATG2BQ96BY7 2078 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 FRYLO94915 3013 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 CLDN5O00501 218 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 AKAP3O75969 853 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 OLFM2O95897 454 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 GTF2H1P32780 548 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 GJA4P35212 333 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 PIK3CAP42336 1068 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 FOXK2Q01167 660 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 EML3Q32P44 896 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 EDRF1Q3B7T1 1238 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 C1orf220Q5T0J3 134 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 FSTL4Q6MZW2 842 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 LONP2Q86WA8 852 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 DDX42Q86XP3 938 aaKnown RBP eCLIP20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 FAM186BQ8IYM0 893 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 CCDC26Q8TAB7 109 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 P2RY13Q9BPV8 354 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 CYP3A43Q9HB55 503 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 IL37Q9NZH6 218 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 MAPK8IP1Q9UQF2 711 aa20.25■□□□□ 0.83
CCDC28A-203ENST00000617445 K7ESF4 209 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 SLC9A3R1O14745 358 aaPredicted RBP20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 NFATC1O95644 943 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 OAS1P00973 400 aaKnown RBP20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 HLA-DRAP01903 254 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 RAP1GAPP47736 663 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 ID4P47928 161 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 GALK1P51570 392 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 CACNA2D1P54289 1103 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 SCARA5Q6ZMJ2 495 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 PAQR9Q6ZVX9 377 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 ACOT1Q86TX2 421 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 FAM35AQ86V20 835 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 KIAA2013Q8IYS2 634 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 CCDC150Q8NCX0 1101 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 CHFRQ96EP1 664 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 FAXDC2Q96IV6 333 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 SDCBP2Q9H190 292 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 GDPD2Q9HCC8 539 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 TMEM30AQ9NV96 361 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 WNT6Q9Y6F9 365 aa20.24■□□□□ 0.83
CCDC28A-203ENST00000617445 CCDC163A0A0D9SF12 145 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 CHURC1-FNTBB4DL54 471 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 LEFTY2O00292 366 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 ABL1P00519 1130 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 TUBP50607 506 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 NDST1P52848 882 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 ZCWPW2Q504Y3 356 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 SNX30Q5VWJ9 437 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 FUKQ8N0W3 1084 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 FMR1NBQ8N0W7 255 aaPredicted RBP20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 TTC16Q8NEE8 873 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 CD101Q93033 1021 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 FBXO32Q969P5 355 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 GSDMAQ96QA5 445 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 KCNK16Q96T55 309 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 RNF38Q9H0F5 515 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 HOOK1Q9UJC3 728 aaKnown RBP20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 GMEB2Q9UKD1 530 aa20.23■□□□□ 0.83
CCDC28A-203ENST00000617445 FAM92AA1XBS5 289 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 TNFRSF10BO14763 440 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 STX10O60499 249 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 AP1G2O75843 785 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 SMC2O95347 1197 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 ASPAP45381 313 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 GCLMP48507 274 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 FNTBP49356 437 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 INCA1Q0VD86 236 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 COBLL1Q53SF7 1204 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 LAIR1Q6GTX8 287 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 ERMP1Q7Z2K6 904 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 DCLK2Q8N568 766 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 FBXO44Q9H4M3 255 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 TMEM8AQ9HCN3 771 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 CSNK1G1Q9HCP0 422 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 CPQQ9Y646 472 aa20.22■□□□□ 0.83
CCDC28A-203ENST00000617445 CETN3O15182 167 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 EGFP01133 1207 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 SLC5A3P53794 718 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 ZXDBP98169 803 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 PPP3CAQ08209 521 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 SIM2Q14190 667 aaPredicted RBP20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 HECTD3Q5T447 861 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 KRT39Q6A163 491 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 WDR5BQ86VZ2 330 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 TTC39CQ8N584 583 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 CAMKK1Q8N5S9 505 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 NT5C1AQ9BXI3 368 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 NIF3L1Q9GZT8 377 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 LINC00597Q9H2U6 94 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 FAM124BQ9H5Z6 455 aaPredicted RBP20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 KRT82Q9NSB4 513 aa20.21■□□□□ 0.83
CCDC28A-203ENST00000617445 TBC1D14Q9P2M4 693 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms