RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 LCLAT1Q6UWP7 414 aa27.23■■□□□ 1.95
TRIM28-204ENST00000594806 APTXQ7Z2E3 356 aaKnown RBP27.23■■□□□ 1.95
TRIM28-204ENST00000594806 SLC44A3Q8N4M1 653 aa27.23■■□□□ 1.95
TRIM28-204ENST00000594806 OBP2AQ9NY56 170 aa27.23■■□□□ 1.95
TRIM28-204ENST00000594806 HHLA1C9JL84 531 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 TADA3O75528 432 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 ATP1A3P13637 1013 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 ZXDAP98168 799 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 BST2Q10589 180 aaKnown RBP27.22■■□□□ 1.95
TRIM28-204ENST00000594806 TAF10Q12962 218 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 MEA1Q16626 185 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 FILIP1LQ4L180 1135 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 FBXO32Q969P5 355 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 ERGIC2Q96RQ1 377 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 LSM14BQ9BX40 385 aaKnown RBP27.22■■□□□ 1.95
TRIM28-204ENST00000594806 SLC46A2Q9BY10 475 aa27.22■■□□□ 1.95
TRIM28-204ENST00000594806 MED7O43513 233 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 SETSIPP0DME0 302 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 UCHL3P15374 230 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 APBA1Q02410 837 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 UBXN1Q04323 297 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 GOLGA7BQ2TAP0 167 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 STXBP5Q5T5C0 1151 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 ARID3BQ8IVW6 561 aaPredicted RBP27.21■■□□□ 1.95
TRIM28-204ENST00000594806 CMTM8Q8IZV2 173 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 TFAP2BQ92481 460 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 EDAQ92838 391 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 DUSP12Q9UNI6 340 aa27.21■■□□□ 1.95
TRIM28-204ENST00000594806 WDR3Q9UNX4 943 aaKnown RBP eCLIP27.21■■□□□ 1.955e-7■■□□□ 12.4
TRIM28-204ENST00000594806 ZNF840PA6NDX5 716 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 GOLGA6L19H0YKK7 550 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 XPO1O14980 1071 aaKnown RBP27.2■■□□□ 1.94
TRIM28-204ENST00000594806 FCARP24071 287 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 AVPR1AP37288 418 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 SNX30Q5VWJ9 437 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 TANGO2Q6ICL3 276 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 TTC30AQ86WT1 665 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 MAB21L3Q8N8X9 362 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 SCAMP5Q8TAC9 235 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 DEPDC1BQ8WUY9 529 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 RSAD2Q8WXG1 361 aa27.2■■□□□ 1.94
TRIM28-204ENST00000594806 KHSRPQ92945 711 aaKnown RBP eCLIP27.2■■□□□ 1.94
TRIM28-204ENST00000594806 NAA15Q9BXJ9 866 aaKnown RBP27.2■■□□□ 1.94
TRIM28-204ENST00000594806 TRAV19A0A0A6YYK7 116 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 SRFP11831 508 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 USP8P40818 1118 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 KIF11P52732 1056 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 BPIFB4P59827 614 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 IFRD2Q12894 506 aaPredicted RBP27.19■■□□□ 1.94
TRIM28-204ENST00000594806 PKDCCQ504Y2 493 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 TXNDC8Q6A555 127 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 LRSAM1Q6UWE0 723 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 PIGZQ86VD9 579 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 STK33Q9BYT3 514 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 KIF9Q9HAQ2 790 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 SCML2Q9UQR0 700 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 SIK3Q9Y2K2 1263 aa27.19■■□□□ 1.94
TRIM28-204ENST00000594806 DPYSL4O14531 572 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 USP17L7P0C7H9 530 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 BRD2P25440 801 aaKnown RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 GNA15P30679 374 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 PLA2G4AP47712 749 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 TUBP50607 506 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 PTK2Q05397 1052 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 PDE4CQ08493 712 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 ZNF268Q14587 947 aaPredicted RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 LUZP1Q86V48 1076 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 FAM71AQ8IYT1 594 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 CELF5Q8N6W0 485 aaKnown RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 KXD1Q9BQD3 176 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 RPP25Q9BUL9 199 aaKnown RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 RTN4Q9NQC3 1192 aaKnown RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 SLC2A4RGQ9NR83 387 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 TLR8Q9NR97 1041 aaKnown RBP27.18■■□□□ 1.94
TRIM28-204ENST00000594806 FHOD1Q9Y613 1164 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 USP3Q9Y6I4 520 aa27.18■■□□□ 1.94
TRIM28-204ENST00000594806 FOXN3O00409 490 aaPredicted RBP27.17■■□□□ 1.94
TRIM28-204ENST00000594806 ZDHHC11BP0C7U3 371 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 PSMC3P17980 439 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 SIGLEC14Q08ET2 396 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 RAPGEF1Q13905 1077 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 DRAP1Q14919 205 aaPredicted RBP27.17■■□□□ 1.94
TRIM28-204ENST00000594806 SYCP1Q15431 976 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 RAB41Q5JT25 222 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 MFSD6LQ8IWD5 586 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 ZNF606Q8WXB4 792 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 KCTD13Q8WZ19 329 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 ZSWIM1Q9BR11 485 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 GANQ9H2C0 597 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 TSPY26PQ9H489 355 aa27.17■■□□□ 1.94
TRIM28-204ENST00000594806 HDCP19113 662 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 PSEN1P49768 467 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 CCDC186Q7Z3E2 898 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 NEK11Q8NG66 645 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 SLC35F5Q8WV83 523 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 PCMTD1Q96MG8 357 aaPredicted RBP27.16■■□□□ 1.94
TRIM28-204ENST00000594806 C1QTNF1Q9BXJ1 281 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 TRPC7Q9HCX4 862 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 TDP1Q9NUW8 608 aa27.16■■□□□ 1.94
TRIM28-204ENST00000594806 AJAP1Q9UKB5 411 aaPredicted RBP27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms