RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ADM5C9JUS6 153 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 H0Y3Z8 333 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 RPS6KA4O75676 772 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 CD6P30203 668 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 MAN2A2P49641 1150 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 SCNN1GP51170 649 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 PGDP52209 483 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 SEC24CP53992 1094 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 DYRK1AQ13627 763 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 EFR3AQ14156 821 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 E2F2Q14209 437 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 CERCAMQ5T4B2 595 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 ATPAF1Q5TC12 328 aaPredicted RBP8.48□□□□□ -1.05
NUP54-215ENST00000514313 RETSATQ6NUM9 610 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 RINT1Q6NUQ1 792 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 RRAGAQ7L523 313 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 GDF7Q7Z4P5 450 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 CIR1Q86X95 450 aaPredicted RBP8.48□□□□□ -1.05
NUP54-215ENST00000514313 NRSN1Q8IZ57 195 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 TMEM125Q96AQ2 219 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 ZBTB45Q96K62 511 aaPredicted RBP8.48□□□□□ -1.05
NUP54-215ENST00000514313 DCLRE1CQ96SD1 692 aaKnown RBP8.48□□□□□ -1.05
NUP54-215ENST00000514313 TAF1DQ9H5J8 278 aaPredicted RBP8.48□□□□□ -1.05
NUP54-215ENST00000514313 WASH6PQ9NQA3 447 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 TRPM5Q9NZQ8 1165 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 KCNE5Q9UJ90 142 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 SERTAD3Q9UJW9 196 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 DAPP1Q9UN19 280 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 SPATA31A3Q5VYP0 1347 aa8.48□□□□□ -1.05
NUP54-215ENST00000514313 PLATP00750 562 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 FAM163BP0C2L3 166 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 FHL3Q13643 280 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 B3GNTL1Q67FW5 361 aaPredicted RBP8.47□□□□□ -1.05
NUP54-215ENST00000514313 Q6ZSN1 163 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 RSRC2Q7L4I2 434 aaKnown RBP8.47□□□□□ -1.05
NUP54-215ENST00000514313 RAB11FIP2Q7L804 512 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 LIMS2Q7Z4I7 341 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 COLGALT2Q8IYK4 626 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 FAM109AQ8N4B1 249 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 MBD3L2Q8NHZ7 208 aaPredicted RBP8.47□□□□□ -1.05
NUP54-215ENST00000514313 CSGALNACT1Q8TDX6 532 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 SNX19Q92543 992 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 RSC1A1Q92681 617 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 ZDHHC12Q96GR4 267 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 TRAPPC9Q96Q05 1148 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 HIST1H2AAQ96QV6 131 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 SNX14Q9Y5W7 946 aa8.47□□□□□ -1.05
NUP54-215ENST00000514313 FAM90A18PA6NE21 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 FAM90A16PA6NEW6 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 FAM90A9PA6NNJ1 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 BTBD11A6QL63 1104 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 GRXCR1A8MXD5 290 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 FAM90A5PA8MXJ8 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 F5H697 171 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 ZSCAN9O15535 394 aaPredicted RBP8.46□□□□□ -1.06
NUP54-215ENST00000514313 TK1P04183 234 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 FAM90A15PP0C7V4 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 FAM90A14PP0C7W9 464 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 COMTP21964 271 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 UQCRC1P31930 480 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 RPS7P62081 194 aaKnown RBP8.46□□□□□ -1.06
NUP54-215ENST00000514313 MPP1Q00013 466 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 CCNIQ14094 377 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 HLXQ14774 488 aaPredicted RBP8.46□□□□□ -1.06
NUP54-215ENST00000514313 GEN1Q17RS7 908 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 MAMDC4Q6UXC1 1216 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 HEATR4Q86WZ0 1026 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 ABHD5Q8WTS1 349 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 KCNC2Q96PR1 638 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 UBN1Q9NPG3 1134 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 SORCS3Q9UPU3 1222 aa8.46□□□□□ -1.06
NUP54-215ENST00000514313 PNMA6EA0A0J9YXQ4 647 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 AHRRA9YTQ3 701 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 CYP27B1O15528 508 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 PPP6R2O75170 966 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 TAF5LO75529 589 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 MBD4O95243 580 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 CFIP05156 583 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 PRKCBP05771 671 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 HLA-DOAP06340 250 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 RXRAP19793 462 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 YY1P25490 414 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 RBL1P28749 1068 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 HTR7P34969 479 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 LIFRP42702 1097 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 PDE6CP51160 858 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 ACTR2P61160 394 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 CXADRP78310 365 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 FPGSQ05932 587 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 TUBB3Q13509 450 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 TRIM60Q495X7 471 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 TTC22Q5TAA0 569 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 DEPDC1Q5TB30 811 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 SFRP4Q6FHJ7 346 aaPredicted RBP8.45□□□□□ -1.06
NUP54-215ENST00000514313 NFRKBQ6P4R8 1299 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 MICALCLQ6ZW33 695 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 LRRC56Q8IYG6 542 aaPredicted RBP8.45□□□□□ -1.06
NUP54-215ENST00000514313 TMEM132CQ8N3T6 1108 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 OR6Y1Q8NGX8 325 aa8.45□□□□□ -1.06
NUP54-215ENST00000514313 C3orf49Q96BT1 292 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms