RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SYNCQ9H7C4 482 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PNPLA8Q9NP80 782 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PRDM6Q9NQX0 595 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 ABHD10Q9NUJ1 306 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 DNMT3BQ9UBC3 853 aaKnown RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 COG5Q9UP83 839 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.78■□□□□ 0.12
NUP54-213ENST00000513352 HHLA1C9JL84 531 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 LCP1P13796 627 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 CHRNB2P17787 502 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 YWHAQP27348 245 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 MTHFRP42898 656 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 GPD2P43304 727 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 PLA2G4AP47712 749 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 ADIGQ0VDE8 80 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 MEA1Q16626 185 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 ATAT1Q5SQI0 421 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 TRIM72Q6ZMU5 477 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 VPS36Q86VN1 386 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 SIX6OS1Q8N1H7 587 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 SMRP1Q8NCR6 262 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 FBXO32Q969P5 355 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 CEP295NLQ96MC4 621 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 DNAJC7Q99615 494 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.78■□□□□ 0.12
NUP54-213ENST00000513352 S1PR5Q9H228 398 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 ZNF334Q9HCZ1 680 aaPredicted RBP15.78■□□□□ 0.12
NUP54-213ENST00000513352 EHD2Q9NZN4 543 aa15.78■□□□□ 0.12
NUP54-213ENST00000513352 UXTQ9UBK9 157 aaPredicted RBP15.78■□□□□ 0.12
NUP54-213ENST00000513352 USP15Q9Y4E8 981 aaPredicted RBP15.78■□□□□ 0.12
NUP54-213ENST00000513352 CLUHO75153 1309 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 LSM8O95777 96 aaKnown RBP15.77■□□□□ 0.12
NUP54-213ENST00000513352 ABL1P00519 1130 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 POU2F2P09086 479 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 GABRR2P28476 465 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 PRKCIP41743 596 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 TKTL1P51854 596 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 USP46P62068 366 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 PDCLQ13371 301 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 SMAD4Q13485 552 aaKnown RBP15.77■□□□□ 0.12
NUP54-213ENST00000513352 PMF1Q6P1K2 205 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 CYP26C1Q6V0L0 522 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 ZNF571Q7Z3V5 609 aaPredicted RBP15.77■□□□□ 0.12
NUP54-213ENST00000513352 MSANTD4Q8NCY6 345 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 IPO4Q8TEX9 1081 aaKnown RBP15.77■□□□□ 0.12
NUP54-213ENST00000513352 SLC35F5Q8WV83 523 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 CPA5Q8WXQ8 436 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 ING5Q8WYH8 240 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 SLITRK1Q96PX8 696 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 MIS12Q9H081 205 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 LHX5Q9H2C1 402 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 DEF6Q9H4E7 631 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 FBXO44Q9H4M3 255 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 IMPACTQ9P2X3 320 aa15.77■□□□□ 0.12
NUP54-213ENST00000513352 BZW2Q9Y6E2 419 aaKnown RBP15.77■□□□□ 0.12
NUP54-213ENST00000513352 ZNF197O14709 1029 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 TNFRSF10BO14763 440 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 PLEKP08567 350 aaPredicted RBP15.76■□□□□ 0.11
NUP54-213ENST00000513352 HMGA1P17096 107 aaKnown RBP15.76■□□□□ 0.11
NUP54-213ENST00000513352 FSHRP23945 695 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 ACADSBP45954 432 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 NOMO3P69849 1222 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 TFF2Q03403 129 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 GET4Q7L5D6 327 aaPredicted RBP15.76■□□□□ 0.11
NUP54-213ENST00000513352 TMC8Q8IU68 726 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 TC2NQ8N9U0 490 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 LEMD2Q8NC56 503 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 PPP1R13BQ96KQ4 1090 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 HSFY1Q96LI6 401 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 ULBP1Q9BZM6 244 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 UBXN6Q9BZV1 441 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 ATXN3LQ9H3M9 355 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 SLITRK6Q9H5Y7 841 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 GMIPQ9P107 970 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 THEGQ9P2T0 379 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 CYTH4Q9UIA0 394 aa15.76■□□□□ 0.11
NUP54-213ENST00000513352 MRPS23Q9Y3D9 190 aaKnown RBP15.76■□□□□ 0.11
NUP54-213ENST00000513352 A0A1W2PRU2 124 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 GRXCR2A6NFK2 248 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 TMCO5BA8MYB1 307 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 E5RJQ4 531 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 MBTPS2O43462 519 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 FGF19O95750 216 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 USP17L7P0C7H9 530 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 GJA1P17302 382 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 CDC25CP30307 473 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 HNRNPH3P31942 346 aaKnown RBP15.75■□□□□ 0.11
NUP54-213ENST00000513352 EIF4A3P38919 411 aaKnown RBP15.75■□□□□ 0.11
NUP54-213ENST00000513352 NSFP46459 744 aaKnown RBP15.75■□□□□ 0.11
NUP54-213ENST00000513352 KIF11P52732 1056 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 SNX16P57768 344 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 CYP4F8P98187 520 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 TAF10Q12962 218 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 CBX2Q14781 532 aaPredicted RBP15.75■□□□□ 0.11
NUP54-213ENST00000513352 CLEC16AQ2KHT3 1053 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 LEXMQ3ZCV2 418 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 ARHGAP15Q53QZ3 475 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 HGSNATQ68CP4 663 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 ERICH1Q86X53 443 aa15.75■□□□□ 0.11
NUP54-213ENST00000513352 WDTC1Q8N5D0 677 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms