RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 RNF220Q5VTB9 566 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 TRIM72Q6ZMU5 477 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 ANKRD13AQ8IZ07 590 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 SPARTQ8N0X7 666 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 PNLDC1Q8NA58 520 aaKnown RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 ABHD11Q8NFV4 315 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 TTC8Q8TAM2 541 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 RITA1Q96K30 269 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZBTB45Q96K62 511 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 DPCDQ9BVM2 203 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 QTRT1Q9BXR0 403 aaKnown RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 SLC29A3Q9BZD2 475 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 INO80BQ9C086 356 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 AS3MTQ9HBK9 375 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 FLRT1Q9NZU1 646 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 AFF4Q9UHB7 1163 aaKnown RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 PCDHGB6Q9Y5F9 930 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 FER1L4A9Z1Z3 1794 aa4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 FRMPD2Q68DX3 1309 aaPredicted RBP4.19□□□□□ -1.74
HMGB1P29-201ENST00000505659 FNDC1Q4ZHG4 1894 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 MBD3L4A6NDZ8 208 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 MBD3L3A6NE82 208 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 ISM1B1AKI9 464 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PRRT4C9JH25 899 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 AGPSO00116 658 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 RRP9O43818 475 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 MAP4K4O95819 1239 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZBED1O96006 694 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PRR35P0CG20 571 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 KLRC1P26715 233 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PEX2P28328 305 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PTDSS1P48651 473 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 RENBPP51606 427 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 ALDH5A1P51649 535 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 TUBA4AP68366 448 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 HOXA4Q00056 320 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 GBX1Q14549 363 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 SLC44A4Q53GD3 710 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZNF626Q68DY1 528 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 CHST15Q7LFX5 561 aaPredicted RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 YTHDF3Q7Z739 585 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 WDR75Q8IWA0 830 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 TERB1Q8NA31 727 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 TIFAQ96CG3 184 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 NMD3Q96D46 503 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 SUCLG2Q96I99 432 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PUS7Q96PZ0 661 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PPP1R9BQ96SB3 815 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 MMS19Q96T76 1030 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 APOL5Q9BWW9 433 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 CIPCQ9C0C6 399 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 XPNPEP3Q9NQH7 507 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 PDGFCQ9NRA1 345 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZSCAN32Q9NX65 697 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 OBP2AQ9NY56 170 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 MID2Q9UJV3 735 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 HDAC9Q9UKV0 1011 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 OGDHLQ9ULD0 1010 aa4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 DRG1Q9Y295 367 aaKnown RBP4.18□□□□□ -1.74
HMGB1P29-201ENST00000505659 LOC102723971A0A1B0GUV8 181 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 F8W8V4 182 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 RAB27BO00194 218 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 CD3EAPO15446 510 aaKnown RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 RGS10O43665 173 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 MARCH6O60337 910 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 MYF5P13349 255 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 UQCRC1P31930 480 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZNF81P51508 661 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 CACNB3P54284 484 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 BCAT1P54687 386 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 KLF9Q13886 244 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 CCNIQ14094 377 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 POLD3Q15054 466 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 NPY5RQ15761 445 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 EZH2Q15910 746 aaKnown RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 AWAT1Q58HT5 328 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 MTX3Q5HYI7 312 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 CYB5RLQ6IPT4 315 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 SLC2A7Q6PXP3 512 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 DAZAP1Q96EP5 407 aaKnown RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 APIPQ96GX9 242 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 WDYHV1Q96HA8 205 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 C5orf34Q96MH7 638 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZNF287Q9HBT7 754 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 ASIC5Q9NY37 505 aa4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 ZNF70Q9UC06 446 aaPredicted RBP4.17□□□□□ -1.74
HMGB1P29-201ENST00000505659 GOLIM4O00461 696 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 CES2O00748 559 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 ADAMTS3O15072 1205 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 PMPCBO75439 489 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 PRKCBP05771 671 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 DLDP09622 509 aaKnown RBP4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 RHCEP18577 417 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 ATF3P18847 181 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 SFPQP23246 707 aaKnown RBP eCLIP4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 ACVR2AP27037 513 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 NTSR1P30989 418 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 GKP32189 559 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 ARHGAP25P42331 645 aa4.16□□□□□ -1.74
HMGB1P29-201ENST00000505659 RHDQ02161 417 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms