RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 EML1O00423 815 aa20.02■□□□□ 0.79
USP48-201ENST00000308271 CPA3P15088 417 aa20.02■□□□□ 0.79
USP48-201ENST00000308271 DRG1Q9Y295 367 aaKnown RBP20.02■□□□□ 0.79
USP48-201ENST00000308271 SLCO1B7G3V0H7 640 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 SLC4A1P02730 911 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 NUP107P57740 925 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 PDAP1Q13442 181 aaKnown RBP20.01■□□□□ 0.79
USP48-201ENST00000308271 SEL1L3Q68CR1 1132 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 KYQ8NBH2 561 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 KAT5Q92993 513 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 TSPAN17Q96FV3 270 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 AGBL1Q96MI9 1066 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 EPAS1Q99814 870 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 BEGAINQ9BUH8 593 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 SLC39A10Q9ULF5 831 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 C3P01024 1663 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 BTBD7Q9P203 1132 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 CCNA1P78396 465 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 PPIDQ08752 370 aaKnown RBP20.01■□□□□ 0.79
USP48-201ENST00000308271 AASDHQ4L235 1098 aaPredicted RBP20.01■□□□□ 0.79
USP48-201ENST00000308271 ZFP1Q6P2D0 407 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 MARK2Q7KZI7 788 aaKnown RBP20.01■□□□□ 0.79
USP48-201ENST00000308271 ZNF606Q8WXB4 792 aa20.01■□□□□ 0.79
USP48-201ENST00000308271 RPAP3Q9H6T3 665 aaPredicted RBP20.01■□□□□ 0.79
USP48-201ENST00000308271 CYP3A7-CYP3A51PA0A087WV96 503 aa20■□□□□ 0.79
USP48-201ENST00000308271 APOA1P02647 267 aa20■□□□□ 0.79
USP48-201ENST00000308271 RAG1P15918 1043 aa20■□□□□ 0.79
USP48-201ENST00000308271 CYP3A7P24462 503 aa20■□□□□ 0.79
USP48-201ENST00000308271 ACVR2BQ13705 512 aa20■□□□□ 0.79
USP48-201ENST00000308271 SKA2Q8WVK7 121 aaPredicted RBP20■□□□□ 0.79
USP48-201ENST00000308271 TFB1MQ8WVM0 346 aaKnown RBP20■□□□□ 0.79
USP48-201ENST00000308271 TNIP3Q96KP6 325 aa20■□□□□ 0.79
USP48-201ENST00000308271 USP18Q9UMW8 372 aa20■□□□□ 0.79
USP48-201ENST00000308271 SMIM31A0A1B0GVY4 71 aa20■□□□□ 0.79
USP48-201ENST00000308271 E9PBE3 544 aa20■□□□□ 0.79
USP48-201ENST00000308271 KLHL41O60662 606 aa20■□□□□ 0.79
USP48-201ENST00000308271 DSTYKQ6XUX3 929 aa20■□□□□ 0.79
USP48-201ENST00000308271 MON2Q7Z3U7 1717 aa20■□□□□ 0.79
USP48-201ENST00000308271 PTGER2P43116 358 aa20■□□□□ 0.79
USP48-201ENST00000308271 SULT1E1P49888 294 aa20■□□□□ 0.79
USP48-201ENST00000308271 ASTE1Q2TB18 679 aaPredicted RBP20■□□□□ 0.79
USP48-201ENST00000308271 IFNEQ86WN2 208 aa20■□□□□ 0.79
USP48-201ENST00000308271 ZNF555Q8NEP9 628 aa20■□□□□ 0.79
USP48-201ENST00000308271 GPRASP2Q96D09 838 aa20■□□□□ 0.79
USP48-201ENST00000308271 CNPY3Q9BT09 278 aa20■□□□□ 0.79
USP48-201ENST00000308271 NMRK1Q9NWW6 199 aa20■□□□□ 0.79
USP48-201ENST00000308271 SNX13Q9Y5W8 968 aa20■□□□□ 0.79
USP48-201ENST00000308271 TIMM44O43615 452 aa20■□□□□ 0.79
USP48-201ENST00000308271 ECHDC2Q86YB7 292 aa20■□□□□ 0.79
USP48-201ENST00000308271 CLEC4FQ8N1N0 589 aa20■□□□□ 0.79
USP48-201ENST00000308271 UBA3Q8TBC4 463 aa20■□□□□ 0.79
USP48-201ENST00000308271 MTSS1O43312 755 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 SLC1A6P48664 564 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 SHC3Q92529 594 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 C10orf88Q9H8K7 445 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 ZMYM2Q9UBW7 1377 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 A8MUI8 341 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 SHMT1P34896 483 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 NFIAQ12857 509 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 OTOAQ7RTW8 1153 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 APPL1Q9UKG1 709 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 FNDC3AQ9Y2H6 1198 aaKnown RBP19.99■□□□□ 0.79
USP48-201ENST00000308271 SNX9Q9Y5X1 595 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 ICAM1P05362 532 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 ZSCAN5DPP0CG00 497 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 TSHRP16473 764 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 KCNA4P22459 653 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 TRPC1P48995 793 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 RPS6P62753 249 aaKnown RBP19.99■□□□□ 0.79
USP48-201ENST00000308271 TMEM132DQ14C87 1099 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 POU5F2Q8N7G0 328 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 TERB1Q8NA31 727 aa19.99■□□□□ 0.79
USP48-201ENST00000308271 FAM163AQ96GL9 167 aaPredicted RBP19.99■□□□□ 0.79
USP48-201ENST00000308271 CA8P35219 290 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 HSD17B4P51659 736 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 CCNHP51946 323 aaPredicted RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 PTK2BQ14289 1009 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 LAYNQ6UX15 382 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 LPCAT2Q7L5N7 544 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 FAR2Q96K12 515 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 SLC12A4Q9UP95 1085 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TSC22D4Q9Y3Q8 395 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 CASZ1Q86V15 1759 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 F8W8V4 182 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 CYP3A4P08684 503 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TRIM16LQ309B1 348 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 DACT3Q96B18 629 aaPredicted RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 ZNF560Q96MR9 790 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TAAR1Q96RJ0 339 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TCF7L2Q9NQB0 619 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 CISHQ9NSE2 258 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 OGTO15294 1046 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 LIASO43766 372 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 NSUN2Q08J23 767 aaKnown RBP eCLIP19.98■□□□□ 0.79
USP48-201ENST00000308271 B3GNT6Q6ZMB0 384 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 SLFN11Q7Z7L1 901 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 FAM151AQ8WW52 585 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 ELMO2Q96JJ3 720 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 FAM49AQ9H0Q0 323 aaPredicted RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 DDX18Q9NVP1 670 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms