RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C YIL014C-AQ02598 104 aa8.85□□□□□ -0.99
SHU1YHL006C YLR194CQ05777 254 aa8.85□□□□□ -0.99
SHU1YHL006C POR1P04840 283 aaKnown RBP8.84□□□□□ -0.99
SHU1YHL006C ERG27Q12452 347 aaKnown RBP8.84□□□□□ -0.99
SHU1YHL006C OST3P48439 350 aa8.83□□□□□ -1
SHU1YHL006C YCL021W-AQ96VH3 125 aa8.83□□□□□ -1
SHU1YHL006C ENV10Q99382 181 aa8.83□□□□□ -1
SHU1YHL006C SNA2P56508 79 aa8.82□□□□□ -1
SHU1YHL006C YOR008C-AQ3E7B9 74 aa8.82□□□□□ -1
SHU1YHL006C YLR307C-AQ3E825 87 aa8.82□□□□□ -1
SHU1YHL006C SMP1P38128 452 aa8.81□□□□□ -1
SHU1YHL006C CIN5P40917 295 aa8.81□□□□□ -1
SHU1YHL006C TOS6P48560 102 aa8.8□□□□□ -1
SHU1YHL006C PAU19P0CE85 124 aa8.79□□□□□ -1
SHU1YHL006C PAU21P0CE86 164 aa8.79□□□□□ -1
SHU1YHL006C PAU22P0CE87 164 aa8.79□□□□□ -1
SHU1YHL006C PAU3P25610 124 aa8.79□□□□□ -1
SHU1YHL006C YFL067WP43537 175 aa8.79□□□□□ -1
SHU1YHL006C PCL2P25693 308 aa8.78□□□□□ -1
SHU1YHL006C NSE4P43124 402 aa8.78□□□□□ -1
SHU1YHL006C LCL1Q02786 101 aa8.77□□□□□ -1.01
SHU1YHL006C PKR1Q03880 122 aaKnown RBP8.76□□□□□ -1.01
SHU1YHL006C TPT1Q12272 230 aaKnown RBP8.76□□□□□ -1.01
SHU1YHL006C URM1P40554 99 aaPredicted RBP8.75□□□□□ -1.01
SHU1YHL006C YMR295CQ03559 197 aa8.75□□□□□ -1.01
SHU1YHL006C MED7Q08278 222 aa8.74□□□□□ -1.01
SHU1YHL006C YMR175W-AQ3E766 64 aa8.74□□□□□ -1.01
SHU1YHL006C YAR029WP39549 74 aa8.73□□□□□ -1.01
SHU1YHL006C HHO1P53551 258 aa8.73□□□□□ -1.01
SHU1YHL006C HMRA2P0CY13 119 aa8.72□□□□□ -1.01
SHU1YHL006C PEX22P39718 180 aa8.7□□□□□ -1.02
SHU1YHL006C CYT2Q00873 224 aa8.7□□□□□ -1.02
SHU1YHL006C MMS2P53152 137 aa8.69□□□□□ -1.02
SHU1YHL006C YAL065CO13511 128 aa8.68□□□□□ -1.02
SHU1YHL006C APS1P35181 156 aa8.68□□□□□ -1.02
SHU1YHL006C VTC1P40046 129 aaRIP-Chip data8.68□□□□□ -1.02not detected
SHU1YHL006C YGL118CP53132 145 aa8.68□□□□□ -1.02
SHU1YHL006C ERV14P53173 138 aa8.68□□□□□ -1.02
SHU1YHL006C ZEO1Q08245 113 aa8.68□□□□□ -1.02
SHU1YHL006C COA3Q3E7B2 85 aa8.68□□□□□ -1.02
SHU1YHL006C GSP1P32835 219 aaKnown RBP8.66□□□□□ -1.02
SHU1YHL006C GSP2P32836 220 aaKnown RBP8.66□□□□□ -1.02
SHU1YHL006C RPL31AP0C2H8 113 aaKnown RBP8.65□□□□□ -1.02
SHU1YHL006C YLR112WQ12130 139 aa8.65□□□□□ -1.02
SHU1YHL006C RPL32P38061 130 aaKnown RBP8.64□□□□□ -1.03
SHU1YHL006C YDR042CQ03205 200 aa8.64□□□□□ -1.03
SHU1YHL006C ATP15P21306 62 aa8.63□□□□□ -1.03
SHU1YHL006C GTT1P40582 234 aa8.63□□□□□ -1.03
SHU1YHL006C DDR48P18899 430 aaKnown RBP8.61□□□□□ -1.03
SHU1YHL006C CMC2Q3E7A4 109 aa8.61□□□□□ -1.03
SHU1YHL006C YER134CP40081 178 aa8.6□□□□□ -1.03
SHU1YHL006C YDL241WQ07738 123 aa8.6□□□□□ -1.03
SHU1YHL006C ECM12O13529 151 aa8.58□□□□□ -1.04
SHU1YHL006C AIM19P40502 157 aa8.58□□□□□ -1.04
SHU1YHL006C HTL1Q9URQ5 78 aa8.58□□□□□ -1.04
SHU1YHL006C POP3P53833 195 aaPredicted RBP8.57□□□□□ -1.04
SHU1YHL006C YKL070WP36087 169 aa8.56□□□□□ -1.04
SHU1YHL006C RPL27BP0C2H7 136 aaKnown RBP8.55□□□□□ -1.04
SHU1YHL006C COX14P39103 70 aa8.55□□□□□ -1.04
SHU1YHL006C CWP2P43497 92 aa8.55□□□□□ -1.04
SHU1YHL006C AQY2P0CD90 149 aa8.54□□□□□ -1.04
SHU1YHL006C YMR103CQ04436 120 aa8.54□□□□□ -1.04
SHU1YHL006C YGL041C-BQ3E750 60 aa8.54□□□□□ -1.04
SHU1YHL006C SHU1P38751 150 aa8.53□□□□□ -1.04
SHU1YHL006C TOA2P32774 122 aa8.51□□□□□ -1.05
SHU1YHL006C PAU16P35994 123 aa8.51□□□□□ -1.05
SHU1YHL006C ARL3Q02804 198 aa8.51□□□□□ -1.05
SHU1YHL006C SMD1Q02260 146 aaPredicted RBP8.5□□□□□ -1.05
SHU1YHL006C FYV4P38783 130 aaPredicted RBP8.49□□□□□ -1.05
SHU1YHL006C OXA1P39952 402 aa8.49□□□□□ -1.05
SHU1YHL006C AIM11P87275 137 aa8.49□□□□□ -1.05
SHU1YHL006C YBL112CQ3E7Y4 105 aa8.49□□□□□ -1.05
SHU1YHL006C RPF1P38805 295 aaKnown RBP8.48□□□□□ -1.05
SHU1YHL006C EOS1P53938 366 aa8.48□□□□□ -1.05
SHU1YHL006C YDR010CQ12426 110 aa8.48□□□□□ -1.05
SHU1YHL006C STF1P01098 86 aa8.47□□□□□ -1.05
SHU1YHL006C YJL197C-AP0C5P0 93 aa8.47□□□□□ -1.05
SHU1YHL006C YDL022C-AP0C5L6 82 aa8.46□□□□□ -1.06
SHU1YHL006C PPT2Q12036 173 aa8.46□□□□□ -1.06
SHU1YHL006C Q0032Q9ZZX7 96 aa8.46□□□□□ -1.06
SHU1YHL006C MVB12P42939 101 aa8.44□□□□□ -1.06
SHU1YHL006C RPL18AP0CX49 186 aaKnown RBP8.43□□□□□ -1.06
SHU1YHL006C RPL18BP0CX50 186 aaKnown RBP8.43□□□□□ -1.06
SHU1YHL006C IGD1P43598 195 aa8.43□□□□□ -1.06
SHU1YHL006C ABF2Q02486 183 aa8.43□□□□□ -1.06
SHU1YHL006C ADH1P00330 348 aaKnown RBP8.41□□□□□ -1.06
SHU1YHL006C PEX17P40155 199 aa8.41□□□□□ -1.06
SHU1YHL006C HAC1P41546 238 aa8.41□□□□□ -1.06
SHU1YHL006C YFL019CP43576 117 aa8.41□□□□□ -1.06
SHU1YHL006C YPL261CQ08976 102 aa8.41□□□□□ -1.06
SHU1YHL006C ATP16Q12165 160 aa8.41□□□□□ -1.06
SHU1YHL006C YBL039W-BP0C268 59 aa8.4□□□□□ -1.06
SHU1YHL006C YGL193CP53097 103 aa8.38□□□□□ -1.07
SHU1YHL006C HYP2P23301 157 aaKnown RBP8.37□□□□□ -1.07
SHU1YHL006C MRPS12P53732 153 aa8.37□□□□□ -1.07
SHU1YHL006C QCR8P08525 94 aa8.36□□□□□ -1.07
SHU1YHL006C YKR041WP36134 250 aa8.36□□□□□ -1.07
SHU1YHL006C MHR1Q06630 226 aa8.35□□□□□ -1.07
SHU1YHL006C MBF1O14467 151 aaKnown RBP8.34□□□□□ -1.07
SHU1YHL006C YGL149WP53116 101 aa8.34□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms