RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC20	YDR498C	RPL16A	P26784	199 aa	Known RBP	4.23	□□□□□ -1.73
SEC20	YDR498C	YBR144C	P34215	104 aa		4.23	□□□□□ -1.73
SEC20	YDR498C	YKL070W	P36087	169 aa		4.23	□□□□□ -1.73
SEC20	YDR498C	KEG1	P43614	200 aa		4.23	□□□□□ -1.73
SEC20	YDR498C	YNR077C	P53758	84 aa		4.23	□□□□□ -1.73
SEC20	YDR498C	YDR274C	P87283	123 aa		4.23	□□□□□ -1.73
SEC20	YDR498C	RPS11A	P0CX47	156 aa	Known RBP	4.22	□□□□□ -1.73
SEC20	YDR498C	RPS11B	P0CX48	156 aa	Known RBP	4.22	□□□□□ -1.73
SEC20	YDR498C	YCR007C	P25354	239 aa		4.22	□□□□□ -1.73
SEC20	YDR498C	APS1	P35181	156 aa		4.22	□□□□□ -1.73
SEC20	YDR498C	YKR070W	P36151	352 aa	Known RBP	4.22	□□□□□ -1.73
SEC20	YDR498C	VTC1	P40046	129 aa	RIP-Chip data	4.22	□□□□□ -1.73	not detected
SEC20	YDR498C	URM1	P40554	99 aa	Predicted RBP	4.22	□□□□□ -1.73
SEC20	YDR498C	YGR035W-A	Q45U48	73 aa		4.22	□□□□□ -1.73
SEC20	YDR498C	RPL31A	P0C2H8	113 aa	Known RBP	4.21	□□□□□ -1.74
SEC20	YDR498C	RPL2A	P0CX45	254 aa	Known RBP	4.21	□□□□□ -1.74
SEC20	YDR498C	RPL2B	P0CX46	254 aa	Known RBP	4.21	□□□□□ -1.74
SEC20	YDR498C	HTL1	Q9URQ5	78 aa		4.21	□□□□□ -1.74
SEC20	YDR498C	YPR170W-B	P0C5R9	85 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	ELF1	P36053	145 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	YKL044W	P36092	106 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	NRG2	P38082	220 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	KRE9	P39005	276 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	YPS5	P53057	165 aa		4.2	□□□□□ -1.74
SEC20	YDR498C	UBC5	P15732	148 aa		4.19	□□□□□ -1.74
SEC20	YDR498C	YNL217W	P40152	326 aa		4.19	□□□□□ -1.74
SEC20	YDR498C	GLC8	P41818	229 aa		4.19	□□□□□ -1.74
SEC20	YDR498C	YGL088W	P53151	121 aa		4.19	□□□□□ -1.74
SEC20	YDR498C	YOR008C-A	Q3E7B9	74 aa		4.19	□□□□□ -1.74
SEC20	YDR498C	MBF1	O14467	151 aa	Known RBP	4.18	□□□□□ -1.74
SEC20	YDR498C	RPS8A	P0CX39	200 aa	Known RBP	4.18	□□□□□ -1.74
SEC20	YDR498C	RPS8B	P0CX40	200 aa	Known RBP	4.18	□□□□□ -1.74
SEC20	YDR498C	ATP15	P21306	62 aa		4.18	□□□□□ -1.74
SEC20	YDR498C	YFR057W	P43625	151 aa		4.18	□□□□□ -1.74
SEC20	YDR498C	MRPS12	P53732	153 aa		4.18	□□□□□ -1.74
SEC20	YDR498C	AIM11	P87275	137 aa		4.18	□□□□□ -1.74
SEC20	YDR498C	YPL261C	Q08976	102 aa		4.18	□□□□□ -1.74
SEC20	YDR498C	HAP3	P13434	144 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YCR001W	P25347	104 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YPT53	P36019	220 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YKR041W	P36134	250 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	UIP3	P39547	235 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YPL073C	P40323	161 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	CIN5	P40917	295 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YCH1	P42937	148 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	COX12	Q01519	83 aa		4.17	□□□□□ -1.74
SEC20	YDR498C	YBR219C	P38317	127 aa		4.16	□□□□□ -1.74
SEC20	YDR498C	YEL008W	P40001	126 aa		4.16	□□□□□ -1.74
SEC20	YDR498C	YLR363W-A	Q3E747	85 aa		4.16	□□□□□ -1.74
SEC20	YDR498C	TRP1	P00912	224 aa		4.15	□□□□□ -1.75
SEC20	YDR498C	RPL32	P38061	130 aa	Known RBP	4.15	□□□□□ -1.75
SEC20	YDR498C	YBR209W	P38311	105 aa		4.15	□□□□□ -1.75
SEC20	YDR498C	YNL198C	P40166	100 aa		4.15	□□□□□ -1.75
SEC20	YDR498C	YLR194C	Q05777	254 aa		4.15	□□□□□ -1.75
SEC20	YDR498C	AUA1	P32450	94 aa		4.14	□□□□□ -1.75
SEC20	YDR498C	AIM29	P36154	155 aa		4.14	□□□□□ -1.75
SEC20	YDR498C	OXA1	P39952	402 aa		4.14	□□□□□ -1.75
SEC20	YDR498C	SCW10	Q04951	389 aa		4.14	□□□□□ -1.75
SEC20	YDR498C	RDS3	Q06835	107 aa	Predicted RBP	4.14	□□□□□ -1.75
SEC20	YDR498C	ADH2	P00331	348 aa	Known RBP	4.13	□□□□□ -1.75
SEC20	YDR498C	MRP49	P32388	137 aa		4.13	□□□□□ -1.75
SEC20	YDR498C	RPF1	P38805	295 aa	Known RBP	4.13	□□□□□ -1.75
SEC20	YDR498C	YNL190W	P53872	204 aa		4.13	□□□□□ -1.75
SEC20	YDR498C	CWC27	Q02770	301 aa		4.13	□□□□□ -1.75
SEC20	YDR498C	RPL28	P02406	149 aa	Known RBP	4.12	□□□□□ -1.75
SEC20	YDR498C	PMP3	P87284	55 aa		4.12	□□□□□ -1.75
SEC20	YDR498C	YLR296W	Q05898	108 aa		4.12	□□□□□ -1.75
SEC20	YDR498C	YER085C	P40058	173 aa		4.11	□□□□□ -1.75
SEC20	YDR498C	ARC15	P40518	154 aa	RIP-Chip data	4.11	□□□□□ -1.75	not detected
SEC20	YDR498C	YIL059C	P40520	121 aa		4.11	□□□□□ -1.75
SEC20	YDR498C	MID2	P36027	376 aa		4.1	□□□□□ -1.75
SEC20	YDR498C	YMR295C	Q03559	197 aa		4.1	□□□□□ -1.75
SEC20	YDR498C	YLR281C	Q05863	155 aa		4.1	□□□□□ -1.75
SEC20	YDR498C	VAM10	Q08474	114 aa		4.1	□□□□□ -1.75
SEC20	YDR498C	IGO2	Q9P305	131 aa		4.1	□□□□□ -1.75
SEC20	YDR498C	RPL18A	P0CX49	186 aa	Known RBP	4.09	□□□□□ -1.75
SEC20	YDR498C	RPL18B	P0CX50	186 aa	Known RBP	4.09	□□□□□ -1.75
SEC20	YDR498C	CPR1	P14832	162 aa	Known RBP	4.09	□□□□□ -1.75
SEC20	YDR498C	SHU1	P38751	150 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	ELC1	Q03071	99 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	YKL023C-A	Q2V2P3	75 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	YIL102C-A	Q2V2P5	75 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	YGR240C-A	Q3E786	66 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	YMR122W-A	Q3E842	84 aa		4.09	□□□□□ -1.75
SEC20	YDR498C	DIF1	O13577	133 aa		4.08	□□□□□ -1.76
SEC20	YDR498C	UGX2	P32772	223 aa		4.08	□□□□□ -1.76
SEC20	YDR498C	YCL021W-A	Q96VH3	125 aa		4.08	□□□□□ -1.76
SEC20	YDR498C	PEX17	P40155	199 aa		4.07	□□□□□ -1.76
SEC20	YDR498C	CRC1	Q12289	327 aa		4.07	□□□□□ -1.76
SEC20	YDR498C	YLL066W-B	Q8TGJ7	56 aa		4.07	□□□□□ -1.76
SEC20	YDR498C	YBR182C-A	Q8TGU6	64 aa		4.07	□□□□□ -1.76
SEC20	YDR498C	YBR126W-A	Q8TGU7	68 aa		4.07	□□□□□ -1.76
SEC20	YDR498C	CDC43	P18898	376 aa		4.06	□□□□□ -1.76
SEC20	YDR498C	YML079W	Q03629	201 aa		4.06	□□□□□ -1.76
SEC20	YDR498C	YCR075W-A	Q3E830	75 aa		4.06	□□□□□ -1.76
SEC20	YDR498C	YBL081W	P38180	368 aa	Known RBP	4.05	□□□□□ -1.76
SEC20	YDR498C	YAL065C	O13511	128 aa		4.04	□□□□□ -1.76
SEC20	YDR498C	PAI3	P01094	68 aa		4.04	□□□□□ -1.76
SEC20	YDR498C	COX14	P39103	70 aa		4.04	□□□□□ -1.76
SEC20	YDR498C	YER181C	P40097	107 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 60.6 ms