RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MTERF2Q49AM1 385 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 RBM20Q5T481 1227 aaKnown RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 TMEM53Q6P2H8 277 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 EPS8L3Q8TE67 593 aaKnown RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 EFCAB1Q9HAE3 211 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 SMARCAL1Q9NZC9 954 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CDYLQ9Y232 598 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 LOC100653049A0A140TA62 436 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 LINC00854A0A1B0GVQ3 168 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 A0A1W2PQ72 361 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 AP5Z1O43299 807 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 NOS1APO75052 506 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 CCNKO75909 580 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 KRT34O76011 436 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 PENKP01210 267 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 FAM228BP0C875 321 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CCNA2P20248 432 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 USP11P51784 963 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 TOB2Q14106 344 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 TRIQKQ629K1 86 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CCDC33Q8N5R6 958 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CCNYL1Q8N7R7 359 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 NARS2Q96I59 477 aaKnown RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 C6orf62Q9GZU0 229 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 UBE2TQ9NPD8 197 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 PNPLA7Q6ZV29 1317 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 SPP2Q13103 211 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 PDZK1Q5T2W1 519 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 PACSIN1Q9BY11 444 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 PCDH12Q9NPG4 1184 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CACNA2D2Q9NY47 1150 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 TRIM49BA6NDI0 452 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 APOL1O14791 398 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 IFNA16P05015 189 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 TCN1P20061 433 aaPredicted RBP13.77□□□□□ -0.2
USP40-208ENST00000450966 FCGRTP55899 365 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 ZNF844Q08AG5 666 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 CSTF3Q12996 717 aaKnown RBP13.77□□□□□ -0.2
USP40-208ENST00000450966 NEDD8Q15843 81 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 NDUFAF2Q8N183 169 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 TTC7AQ9ULT0 858 aaPredicted RBP13.77□□□□□ -0.2
USP40-208ENST00000450966 ING4Q9UNL4 249 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 FER1L4A9Z1Z3 1794 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 MAGEA4P43358 317 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 CNPY1Q3B7I2 92 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 SLC39A3Q9BRY0 314 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 ADARB2Q9NS39 739 aaKnown RBP13.77□□□□□ -0.2
USP40-208ENST00000450966 EMILIN3Q9NT22 766 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 ANAPC7Q9UJX3 599 aa13.77□□□□□ -0.2
USP40-208ENST00000450966 H3BNX3 289 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 GOLGA8SH3BPF8 625 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 NDUFB5O43674 189 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 TRIM13O60858 407 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 TYK2P29597 1187 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 SLC45A4Q5BKX6 768 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 PDPRQ8NCN5 879 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 LINC00116Q8NCU8 138 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 ZNF564Q8TBZ8 553 aaPredicted RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 DLG3Q92796 817 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 PTPRN2Q92932 1015 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 ZNF512BQ96KM6 892 aaPredicted RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 GPATCH1Q9BRR8 931 aaKnown RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 UBA2Q9UBT2 640 aaPredicted RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 SQORQ9Y6N5 450 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 LYNP07948 512 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 CHRNA5P30532 468 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 MTMR1Q13613 665 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 ERMARDQ5T6L9 678 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 AAGABQ6PD74 315 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 NUDT18Q6ZVK8 323 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 METTL16Q86W50 562 aaKnown RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 RNASE11Q8TAA1 199 aaKnown RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 PDCD10Q9BUL8 212 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 STK36Q9NRP7 1315 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 DENND3A2RUS2 1198 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 RNF103O00237 685 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 ANPEPP15144 967 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 DPEP1P16444 411 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 MCAMP43121 646 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 LRRC41Q15345 812 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 DHDDSQ86SQ9 333 aa13.77□□□□□ -0.21
USP40-208ENST00000450966 DDX50Q9BQ39 737 aaKnown RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
USP40-208ENST00000450966 SPDYE2BA6NHP3 402 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 TTLL13PA6NNM8 815 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 IGKV5-2P06315 115 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 SPDYE6P0CI01 402 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 UQCRBP14927 111 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 ATXN3P54252 364 aaPredicted RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 PDCD6IPQ8WUM4 868 aaKnown RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 RORBQ92753 470 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 TBC1D10AQ9BXI6 508 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 SPRTNQ9H040 489 aaPredicted RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 KLHL3Q9UH77 587 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 PDS5AQ29RF7 1337 aaKnown RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 HOXC6P09630 235 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 EIF2AK2P19525 551 aaKnown RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 ITGAXP20702 1163 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 DRD4P21917 467 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 ABATP80404 500 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms