RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 NELFBQ8WX92 580 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 RSPRY1Q96DX4 576 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 SMARCD1Q96GM5 515 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 CEP63Q96MT8 703 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 SLITRK1Q96PX8 696 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 DDX23Q9BUQ8 820 aaKnown RBP11.91□□□□□ -0.5
RFFL-204ENST00000414419 NT5C1AQ9BXI3 368 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 OSBPL6Q9BZF3 934 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 ZNF518BQ9C0D4 1074 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 NIF3L1Q9GZT8 377 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 SMG9Q9H0W8 520 aaKnown RBP11.91□□□□□ -0.5
RFFL-204ENST00000414419 KIF9Q9HAQ2 790 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 LTB4R2Q9NPC1 389 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 RAB20Q9NX57 234 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 PIAS3Q9Y6X2 628 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 CACNA1IQ9P0X4 2223 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 CACNA1HO95180 2353 aa11.91□□□□□ -0.5
RFFL-204ENST00000414419 HELZP42694 1942 aaKnown RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 RTN3O95197 1032 aaPredicted RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 GLULP15104 373 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 CD44P16070 742 aaKnown RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 HDCP19113 662 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 YWHAQP27348 245 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 MAGEA9P43362 315 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 MCCD1P59942 119 aaPredicted RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 ORC1Q13415 861 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 MORC3Q14149 939 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 CAMK4Q16566 473 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 C1orf228Q6PIY5 440 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 FRMD5Q7Z6J6 570 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 FILIP1Q7Z7B0 1213 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 FAM35AQ86V20 835 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 ZC3H3Q8IXZ2 948 aaKnown RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 NUP93Q8N1F7 819 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 CRYBG2Q8N1P7 616 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 TRIML1Q8N9V2 468 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 FAM3CQ92520 227 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 MSANTD3Q96H12 275 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 FAXDC2Q96IV6 333 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 C8orf33Q9H7E9 229 aaPredicted RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 APOBEC3GQ9HC16 384 aaKnown RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 DMAP1Q9NPF5 467 aaPredicted RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 NDRG2Q9UN36 371 aaKnown RBP11.9□□□□□ -0.5
RFFL-204ENST00000414419 CTNND2Q9UQB3 1225 aa11.9□□□□□ -0.5
RFFL-204ENST00000414419 NCANO14594 1321 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 PPP1R3GB7ZBB8 358 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 TADA3O75528 432 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 AP1G2O75843 785 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 FGFR1OPO95684 399 aaKnown RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 CCDC130P13994 396 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 PFKLP17858 780 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 TARSP26639 723 aaKnown RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 CACNA2D1P54289 1103 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 MLLT6P55198 1093 aaPredicted RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 USP46P62068 366 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 INCA1Q0VD86 236 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 CETN1Q12798 172 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 TAF10Q12962 218 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 PAK1Q13153 545 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 ZNF268Q14587 947 aaPredicted RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 ANGPT1Q15389 498 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 ARL14EPQ8N8R7 260 aaPredicted RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 PDZD8Q8NEN9 1154 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 SLC2A14Q8TDB8 520 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 SEMA4DQ92854 862 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 USP13Q92995 863 aaPredicted RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 FBXO32Q969P5 355 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 CYFIP2Q96F07 1278 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 ZFYVE19Q96K21 471 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 LRRC3BQ96PB8 259 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 CYP2S1Q96SQ9 504 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 KCNK16Q96T55 309 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 TTLL2Q9BWV7 592 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 GKN1Q9NS71 199 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 KRT82Q9NSB4 513 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 FAM49BQ9NUQ9 324 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 HMGXB4Q9UGU5 601 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 CCL26Q9Y258 94 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 MTF2Q9Y483 593 aaPredicted RBP11.89□□□□□ -0.51
RFFL-204ENST00000414419 MYO16Q9Y6X6 1858 aa11.89□□□□□ -0.51
RFFL-204ENST00000414419 COL4A3Q01955 1670 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 C2orf78A6NCI8 922 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 ARNTLO00327 626 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 LRRN2O75325 713 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 CILPO75339 1184 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 GNA14O95837 355 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 FAM200BP0CF97 657 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 ADORA2BP29275 332 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 STX17P56962 302 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 MAP3K7CLP57077 242 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 YWHAEP62258 255 aaKnown RBP11.88□□□□□ -0.51
RFFL-204ENST00000414419 AMPD2Q01433 879 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 ITPRIPL2Q3MIP1 535 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 ZNF394Q53GI3 561 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 FOXR2Q6PJQ5 311 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 PAQR9Q6ZVX9 377 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 C1orf210Q8IVY1 113 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 FUKQ8N0W3 1084 aa11.88□□□□□ -0.51
RFFL-204ENST00000414419 C12orf29Q8N999 325 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms