RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 SLC35F5Q8WV83 523 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 HAUS1Q96CS2 278 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 PIWIL1Q96J94 861 aaKnown RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 ZNF317Q96PQ6 595 aaPredicted RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 PEBP4Q96S96 227 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 TSPAN18Q96SJ8 248 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 NXF3Q9H4D5 531 aaKnown RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 CCDC134Q9H6E4 229 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 EURLQ9NYK6 297 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 SAE1Q9UBE0 346 aaPredicted RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 TUBGCP4Q9UGJ1 667 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 PCSK1NQ9UHG2 260 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 HES2Q9Y543 173 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 SNX9Q9Y5X1 595 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 APOC4-APOC2K7ER74 178 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 DPYSL4O14531 572 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 RECQL4O94761 1208 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 APOC2P02655 101 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 PECAM1P16284 738 aaPredicted RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 HOXC8P31273 242 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 MAGEA4P43358 317 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 STAT4Q14765 748 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 TAF5Q15542 800 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 SOWAHAQ2M3V2 549 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 C9orf57Q5W0N0 161 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 ARHGAP17Q68EM7 881 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 OLFML1Q6UWY5 402 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 YTHDF3Q7Z739 585 aaKnown RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 TMEM40Q8WWA1 233 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 RXFP2Q8WXD0 754 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 C18orf25Q96B23 403 aaPredicted RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 PHACTR1Q9C0D0 580 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 RSAD1Q9HA92 442 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 GJD2Q9UKL4 321 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 UBQLN1Q9UMX0 589 aaKnown RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 Q9Y3F1 56 aa9.49□□□□□ -0.89
TDP1-202ENST00000393452 FARP1Q9Y4F1 1045 aaPredicted RBP9.49□□□□□ -0.89
TDP1-202ENST00000393452 SGK1O00141 431 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 IGF2BP3O00425 579 aaKnown RBP eCLIP9.48□□□□□ -0.89
TDP1-202ENST00000393452 PIRO00625 290 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CDH16O75309 829 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 GABBR2O75899 941 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PDGFRAP16234 1089 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 ATP5DP30049 168 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PSMC4P43686 418 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PSEN2P49810 448 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 IRX5P78411 483 aaPredicted RBP9.48□□□□□ -0.89
TDP1-202ENST00000393452 PLCB3Q01970 1234 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PPARDQ03181 441 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 SH3PXD2AQ5TCZ1 1133 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 OR6B2Q6IFH4 312 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 C6orf89Q6UWU4 347 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 DPH6Q7L8W6 267 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 LIMS2Q7Z4I7 341 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 ACOT1Q86TX2 421 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 KCTD6Q8NC69 237 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 DNAJB3Q8WWF6 145 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PRCCQ92733 491 aaPredicted RBP9.48□□□□□ -0.89
TDP1-202ENST00000393452 KHSRPQ92945 711 aaKnown RBP eCLIP9.48□□□□□ -0.895e-6■■□□□ 14.1
TDP1-202ENST00000393452 ARHGEF2Q92974 986 aaKnown RBP9.48□□□□□ -0.89
TDP1-202ENST00000393452 LENG1Q96BZ8 264 aaPredicted RBP9.48□□□□□ -0.89
TDP1-202ENST00000393452 C9orf72Q96LT7 481 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 TTC25Q96NG3 672 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 SELENOSQ9BQE4 189 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 IFNB1P01574 187 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 KCNE1P15382 129 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 DRD4P21917 467 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CPT1AP50416 773 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 GDF10P55107 478 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 DYNLT1P63172 113 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 QPCTQ16769 361 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 GLRA4Q5JXX5 417 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 UBXN11Q5T124 520 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PCGF5Q86SE9 256 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 VSIG1Q86XK7 387 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CRYBG2Q8N1P7 616 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 PPP1R13LQ8WUF5 828 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CHMP6Q96FZ7 201 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CFAP57Q96MR6 1250 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 INTS9Q9NV88 658 aaKnown RBP9.48□□□□□ -0.89
TDP1-202ENST00000393452 GDAP2Q9NXN4 497 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 CTNNAL1Q9UBT7 734 aa9.48□□□□□ -0.89
TDP1-202ENST00000393452 TRPM7Q96QT4 1865 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 SMIM28A0A1B0GU29 152 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 TRIM66O15016 1216 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 ALOX15BO15296 676 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 TREHO43280 583 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 CD4P01730 458 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 RPL34P49207 117 aaKnown RBP9.47□□□□□ -0.89
TDP1-202ENST00000393452 SLC6A3Q01959 620 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 CCL14Q16627 93 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 C15orf59Q2T9L4 293 aaPredicted RBP9.47□□□□□ -0.89
TDP1-202ENST00000393452 CCDC14Q49A88 953 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 CCDC38Q502W7 563 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 RAB6CQ53S08 254 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 FBXO47Q5MNV8 452 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 VSTM1Q6UX27 236 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 MICALCLQ6ZW33 695 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 SESTD1Q86VW0 696 aa9.47□□□□□ -0.89
TDP1-202ENST00000393452 ZDHHC17Q8IUH5 632 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms