RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 EMC1Q8N766 993 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 LRRN4CLQ8ND94 238 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 KCNK16Q96T55 309 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.24■■■□□ 2.119e-6■□□□□ 9.3
MSX1-201ENST00000382723 TMEM30AQ9NV96 361 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 USTQ9Y2C2 406 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 PAPSS1O43252 624 aaPredicted RBP28.24■■■□□ 2.11
MSX1-201ENST00000382723 RTP2Q5QGT7 225 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 TMEM240Q5SV17 173 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 IGSF21Q96ID5 467 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 HSFY1Q96LI6 401 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 HTATIP2Q9BUP3 242 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 ZCWPW1Q9H0M4 648 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 CXXC1Q9P0U4 656 aaPredicted RBP28.24■■■□□ 2.11
MSX1-201ENST00000382723 DDX3YO15523 660 aaKnown RBP28.23■■■□□ 2.11
MSX1-201ENST00000382723 GRAP2O75791 330 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 ACADSBP45954 432 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 ZNF252P-AS1Q0IIN9 211 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 ZNF280DQ6N043 979 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 OLFML1Q6UWY5 402 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 SPATA2LQ8IUW3 424 aaPredicted RBP28.23■■■□□ 2.11
MSX1-201ENST00000382723 MNS1Q8NEH6 495 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 CLEC4CQ8WTT0 213 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 ZNF558Q96NG5 402 aa28.23■■■□□ 2.11
MSX1-201ENST00000382723 RPL34P49207 117 aaKnown RBP28.22■■■□□ 2.11
MSX1-201ENST00000382723 MRPL58Q14197 206 aaKnown RBP28.22■■■□□ 2.11
MSX1-201ENST00000382723 TAF5Q15542 800 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 PSRC1Q6PGN9 363 aaPredicted RBP28.22■■■□□ 2.11
MSX1-201ENST00000382723 KRT35Q92764 455 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 TTPALQ9BTX7 342 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 CYLDQ9NQC7 956 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 MARCKSL1P49006 195 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 SLC6A3Q01959 620 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 ADIGQ0VDE8 80 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 CREG2Q8IUH2 290 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 DCP1BQ8IZD4 617 aaKnown RBP28.22■■■□□ 2.11
MSX1-201ENST00000382723 ZMIZ2Q8NF64 920 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 MYRIPQ8NFW9 859 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.22■■■□□ 2.11
MSX1-201ENST00000382723 CD101Q93033 1021 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 MS4A14Q96JA4 679 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 EHD2Q9NZN4 543 aa28.22■■■□□ 2.11
MSX1-201ENST00000382723 MIF4GDA9UHW6 222 aaKnown RBP28.21■■■□□ 2.11
MSX1-201ENST00000382723 SLC1A1P43005 524 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 SSR1P43307 286 aaKnown RBP28.21■■■□□ 2.11
MSX1-201ENST00000382723 ARPP19P56211 112 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 C4orf50Q6ZRC1 276 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 UBL4BQ8N7F7 174 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 ZBED2Q9BTP6 218 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 LRRC4Q9HBW1 653 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 SMARCAL1Q9NZC9 954 aa28.21■■■□□ 2.11
MSX1-201ENST00000382723 PSMA2P25787 234 aa28.2■■■□□ 2.11
MSX1-201ENST00000382723 ZDHHC17Q8IUH5 632 aa28.2■■■□□ 2.11
MSX1-201ENST00000382723 ALG3Q92685 438 aa28.2■■■□□ 2.11
MSX1-201ENST00000382723 VN1R3Q9BXE9 311 aa28.2■■■□□ 2.11
MSX1-201ENST00000382723 F8VP50 259 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 GJB5O95377 273 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 CCDC181Q5TID7 509 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 PRSS55Q6UWB4 352 aaPredicted RBP28.2■■■□□ 2.1
MSX1-201ENST00000382723 CEP112Q8N8E3 955 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 COLGALT1Q8NBJ5 622 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 KCTD13Q8WZ19 329 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 DPF3Q92784 378 aa28.2■■■□□ 2.1
MSX1-201ENST00000382723 ABI2Q9NYB9 513 aaPredicted RBP28.2■■■□□ 2.1
MSX1-201ENST00000382723 PDE2AO00408 941 aaPredicted RBP28.19■■■□□ 2.1
MSX1-201ENST00000382723 LAG3P18627 525 aa28.19■■■□□ 2.1
MSX1-201ENST00000382723 CTNNA1P35221 906 aaKnown RBP28.19■■■□□ 2.1
MSX1-201ENST00000382723 NDUFV1P49821 464 aa28.19■■■□□ 2.1
MSX1-201ENST00000382723 SIX6OS1Q8N1H7 587 aa28.19■■■□□ 2.1
MSX1-201ENST00000382723 NDRG1Q92597 394 aaKnown RBP28.19■■■□□ 2.1
MSX1-201ENST00000382723 CSNK1G1Q9HCP0 422 aa28.19■■■□□ 2.1
MSX1-201ENST00000382723 TMEM59LQ9UK28 342 aa28.19■■■□□ 2.1
MSX1-201ENST00000382723 OR6C75A6NL08 312 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 H7C4K7 107 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 CEP104O60308 925 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 CYP2F1P24903 491 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 MAN1A1P33908 653 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 TKTL1P51854 596 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 PIGHQ14442 188 aaPredicted RBP28.18■■■□□ 2.1
MSX1-201ENST00000382723 USP41Q3LFD5 358 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 ANKS3Q6ZW76 656 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 GPRIN1Q7Z2K8 1008 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 SLC39A11Q8N1S5 342 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 PBKQ96KB5 322 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 PGLYRP2Q96PD5 576 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 DMAP1Q9NPF5 467 aaPredicted RBP28.18■■■□□ 2.1
MSX1-201ENST00000382723 LCMT1Q9UIC8 334 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 PCDHA3Q9Y5H8 950 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 CAPN15O75808 1086 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 CTNNA2P26232 953 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 DCAF12L1Q5VU92 463 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 RSPO2Q6UXX9 243 aaPredicted RBP28.18■■■□□ 2.1
MSX1-201ENST00000382723 TMEM169Q96HH4 297 aa28.18■■■□□ 2.1
MSX1-201ENST00000382723 LBHD1Q9BQE6 289 aaPredicted RBP28.18■■■□□ 2.1
MSX1-201ENST00000382723 CCDC66A2RUB6 948 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 EFEMP2O95967 443 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 CPB1P15086 417 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 FLT3P36888 993 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 PEX5P50542 639 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 TAS2R40P59535 323 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms