RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 TFEBP19484 476 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 TGM1P22735 817 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 THPOP40225 353 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 RGS2P41220 211 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 KCNC1P48547 511 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 AARSP49588 968 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS29-210ENST00000552130 HK3P52790 923 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PPP5CP53041 499 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 RAD23AP54725 363 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 RTP1P59025 263 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 IRX3P78415 501 aaPredicted RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 POU4F1Q01851 419 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 KLHL30Q0D2K2 578 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 NOGQ13253 232 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 SLC14A1Q13336 389 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 KIR3DS1Q14943 382 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 ZXDCQ2QGD7 858 aaPredicted RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 C3orf38Q5JPI3 329 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 MEX3CQ5U5Q3 659 aaKnown RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 ZPBP2Q6X784 338 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 CATSPERGQ6ZRH7 1159 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 TMC3Q7Z5M5 1100 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 RALYLQ86SE5 291 aaKnown RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 IQCF2Q8IXL9 164 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 ADSSL1Q8N142 457 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 RCBTB1Q8NDN9 531 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 Q8NFD4 153 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 USP6NLQ92738 828 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 KRT35Q92764 455 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 CUL5Q93034 780 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 ZNF764Q96H86 408 aaPredicted RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 RUNDC3BQ96NL0 473 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 KCNJ15Q99712 375 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 GDF15Q99988 308 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PRDM14Q9GZV8 571 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PDCL3Q9H2J4 239 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 TMPRSS5Q9H3S3 457 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PAPOLBQ9NRJ5 636 aaKnown RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 LMBRD1Q9NUN5 540 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 STK32BQ9NY57 414 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 ZNF624Q9P2J8 865 aaPredicted RBP6.81□□□□□ -1.32
VPS29-210ENST00000552130 TNFRSF10DQ9UBN6 386 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PCSK1NQ9UHG2 260 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 CPA4Q9UI42 421 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 PIAS3Q9Y6X2 628 aa6.81□□□□□ -1.32
VPS29-210ENST00000552130 SSU72P8A0A1W2PR75 194 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 KRT87PA6NCN2 255 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 AKR1B15C9JRZ8 316 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 PTGES3LE9PB15 166 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 H0Y8X5 98 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 ZBTB43O43298 467 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 ZBTB14O43829 449 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 TBX10O75333 385 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 SNX4O95219 450 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 NDST3O95803 873 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 AMY2AP04746 511 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 PLS3P13797 630 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 LAG3P18627 525 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 EN2P19622 333 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 AMY2BP19961 511 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 IGFBP6P24592 240 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 PNLIPRP1P54315 467 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 CCT2P78371 535 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 CDK17Q00537 523 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 MAP2K1Q02750 393 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 GALNT2Q10471 571 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 AIMP1Q12904 312 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 MALLQ13021 153 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 COASYQ13057 564 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 PUM1Q14671 1186 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS29-210ENST00000552130 GPR19Q15760 415 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 TBCEQ15813 527 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 ATG16L1Q676U5 607 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 KLHL24Q6TFL4 600 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 ESPNLQ6ZVH7 1005 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 MIGA2Q7L4E1 593 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 PIWIL3Q7Z3Z3 882 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 GATAD2AQ86YP4 633 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 CCDC117Q8IWD4 279 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 DIS3L2Q8IYB7 885 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 HSPH1Q92598 858 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 ARHGEF2Q92974 986 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 PTP4A1Q93096 173 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 CHFRQ96EP1 664 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 SNX22Q96L94 193 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 FCRL2Q96LA5 508 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 UIMC1Q96RL1 719 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 TNMDQ9H2S6 317 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 TAF1DQ9H5J8 278 aaPredicted RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 LIN28AQ9H9Z2 209 aaKnown RBP6.8□□□□□ -1.32
VPS29-210ENST00000552130 PDE7BQ9NP56 450 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 TNFRSF12AQ9NP84 129 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 SACM1LQ9NTJ5 587 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 COQ3Q9NZJ6 369 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 CLEC1BQ9P126 229 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 PCDHA2Q9Y5H9 948 aa6.8□□□□□ -1.32
VPS29-210ENST00000552130 PRSS38A1L453 326 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 C2orf81A6NN90 581 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 CLCA1A8K7I4 914 aa6.79□□□□□ -1.32
VPS29-210ENST00000552130 TAF4O00268 1085 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms