RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ABHD2P08910 425 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 GDF10P55107 478 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 RBP5P82980 135 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 MYO1EQ12965 1108 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 MPP2Q14168 576 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 HP1BP3Q5SSJ5 553 aaPredicted RBP19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 BBS12Q6ZW61 710 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 ZNF467Q7Z7K2 595 aaPredicted RBP19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 ZNF408Q9H9D4 720 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 PIK3R2O00459 728 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 STRNO43815 780 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 CDH16O75309 829 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 FSBPO95073 299 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 SPRED3Q2MJR0 410 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 FAM102AQ5T9C2 384 aaPredicted RBP19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 CEP128Q6ZU80 1094 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 PIGWQ7Z7B1 504 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 KAT2BQ92831 832 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 KIF12Q96FN5 646 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 ADPGKQ9BRR6 497 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 RALGAPA2Q2PPJ7 1873 aa19.46■□□□□ 0.71
PRPF40B-208ENST00000548436 TRUB2O95900 331 aaKnown RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 MMP3P08254 477 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 GCAP28676 217 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 TTC31Q49AM3 519 aaPredicted RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 SH3PXD2AQ5TCZ1 1133 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 TRNP1Q6NT89 227 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CCDC121Q6ZUS5 278 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 C12orf29Q8N999 325 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CMASQ8NFW8 434 aaPredicted RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 HSPH1Q92598 858 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 PRCCQ92733 491 aaPredicted RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 PEBP4Q96S96 227 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CCDC77Q9BR77 488 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 KCNK9Q9NPC2 374 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 USP18Q9UMW8 372 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CAPN7Q9Y6W3 813 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CCL15-CCL14A0A0B4J2E2 113 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 STAU1O95793 577 aaKnown RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 PFKMP08237 780 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 VIMP08670 466 aaKnown RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 BRAFP15056 766 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 SF3A3Q12874 501 aaKnown RBP eCLIP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CCL15Q16663 113 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 KIZQ2M2Z5 673 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 RAB6CQ53S08 254 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 KCTD6Q8NC69 237 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 BRI3BPQ8WY22 251 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 PIWIL1Q96J94 861 aaKnown RBP19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 CFAP57Q96MR6 1250 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 RAB6CQ9H0N0 254 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 MLXIPLQ9NP71 852 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 MORF4L1Q9UBU8 362 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 TSPAN16Q9UKR8 245 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 SCN4AP35499 1836 aa19.45■□□□□ 0.7
PRPF40B-208ENST00000548436 ADCY6O43306 1168 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 RNF8O76064 485 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 GRM5P41594 1212 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 TMEM62Q0P6H9 643 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 ACAP1Q15027 740 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 DUSP28Q4G0W2 176 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 LCLAT1Q6UWP7 414 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 GPR142Q7Z601 462 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 DPP9Q86TI2 863 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 ANKRD42Q8N9B4 389 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 TTC13Q8NBP0 860 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 MAML3Q96JK9 1138 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 SHOC2Q9UQ13 582 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 SLC45A1Q9Y2W3 748 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 FARP1Q9Y4F1 1045 aaPredicted RBP19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 E5RJQ4 531 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 HOXD8P13378 290 aaPredicted RBP19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 ZNF143P52747 638 aaPredicted RBP19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 GAD2Q05329 585 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 SLC20A2Q08357 652 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 FAM183BPQ6ZVS7 135 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 CYP4V2Q6ZWL3 525 aaPredicted RBP19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 NT5DC4Q86YG4 428 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 SRRM1Q8IYB3 904 aaKnown RBP19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 CCDC197Q8NCU1 140 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 OR6J1Q8NGC5 347 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 DYDC1Q8WWB3 177 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 MAML1Q92585 1016 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 NT5C1AQ9BXI3 368 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 SETD4Q9NVD3 440 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 ASNSD1Q9NWL6 643 aa19.44■□□□□ 0.7
PRPF40B-208ENST00000548436 GOLGA8MH3BSY2 632 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 PPEF2O14830 753 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 ALOX15BO15296 676 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 BANF1O75531 89 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 NPTXRO95502 500 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 HOXA11P31270 313 aaPredicted RBP19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 ACTN3Q08043 901 aaPredicted RBP19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 ZNF410Q86VK4 478 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 RFX6Q8HWS3 928 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 ZBED8Q8IZ13 594 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 PPP1R13LQ8WUF5 828 aa19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 ZMAT2Q96NC0 199 aaKnown RBP19.43■□□□□ 0.7
PRPF40B-208ENST00000548436 TTC25Q96NG3 672 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms