RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FAM3CQ92520 227 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 MRPS31Q92665 395 aaKnown RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 PCED1BQ96HM7 432 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 SEMA4AQ9H3S1 761 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 C8orf33Q9H7E9 229 aaPredicted RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 MAGED2Q9UNF1 606 aaPredicted RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 WDR87Q6ZQQ6 2873 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 PTPN1P18031 435 aaKnown RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 BDNFP23560 247 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 ENPEPQ07075 957 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 BIRC3Q13489 604 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 NCOA4Q13772 614 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 ZNF268Q14587 947 aaPredicted RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 C1orf220Q5T0J3 134 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 TXNDC8Q6A555 127 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 SCN4BQ8IWT1 228 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 FMR1NBQ8N0W7 255 aaPredicted RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 OR6B3Q8NGW1 331 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 USP13Q92995 863 aaPredicted RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 NKD2Q969F2 451 aaPredicted RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 KIF9Q9HAQ2 790 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 TDP1Q9NUW8 608 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 SPATA6Q9NWH7 488 aaPredicted RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 NXF1Q9UBU9 619 aaKnown RBP20.7■□□□□ 0.9
USP40-207ENST00000450940 FRMD4BQ9Y2L6 1034 aa20.7■□□□□ 0.9
USP40-207ENST00000450940 DMDP11532 3685 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 AVPR1AP37288 418 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 SGSM1Q2NKQ1 1148 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 ZNF699Q32M78 642 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 ZCWPW2Q504Y3 356 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 ZNF667Q5HYK9 610 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 MDH1BQ5I0G3 518 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 RALGPS2Q86X27 583 aaPredicted RBP20.69■□□□□ 0.9
USP40-207ENST00000450940 ENGASEQ8NFI3 743 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 ZFYVE19Q96K21 471 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 C8orf48Q96LL4 319 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 FAM83CQ9BQN1 747 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 IER2Q9BTL4 223 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 TTLL2Q9BWV7 592 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 SMG9Q9H0W8 520 aaKnown RBP20.69■□□□□ 0.9
USP40-207ENST00000450940 CHRDQ9H2X0 955 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 THG1LQ9NWX6 298 aaKnown RBP20.69■□□□□ 0.9
USP40-207ENST00000450940 FAM186AA6NE01 2351 aa20.69■□□□□ 0.9
USP40-207ENST00000450940 LAMTOR5O43504 91 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 CHRNB1P11230 501 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 CCNE1P24864 410 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 CYP27A1Q02318 531 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 CEP135Q66GS9 1140 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 SV2AQ7L0J3 742 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 B3GALNT2Q8NCR0 500 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 TAF4BQ92750 862 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 NELL1Q92832 810 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 CCDC34Q96HJ3 373 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 DPEP3Q9H4B8 488 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 NDRG2Q9UN36 371 aaKnown RBP20.68■□□□□ 0.9
USP40-207ENST00000450940 CCL26Q9Y258 94 aa20.68■□□□□ 0.9
USP40-207ENST00000450940 HELZP42694 1942 aaKnown RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 A8MXQ7 604 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 SPECC1L-ADORA2AF8WAN1 911 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 TRIM66O15016 1216 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 AKAP3O75969 853 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 NR2F2P24468 414 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 RPL13P26373 211 aaKnown RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 CTHP32929 405 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 GRIK1P39086 918 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 KPNA1P52294 538 aaPredicted RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 CDH8P55286 799 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 NOP14P78316 857 aaKnown RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 DENND5BQ6ZUT9 1274 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 B3GNT5Q9BYG0 378 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 ELOVL4Q9GZR5 314 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 SMYD3Q9H7B4 428 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 LMAN1LQ9HAT1 526 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 PRMT8Q9NR22 394 aaPredicted RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 GKN1Q9NS71 199 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 GTSE1Q9NYZ3 720 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 GCNT4Q9P109 453 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 MAPK8IP1Q9UQF2 711 aa20.67■□□□□ 0.9
USP40-207ENST00000450940 PTPRZ1P23471 2315 aaPredicted RBP20.67■□□□□ 0.9
USP40-207ENST00000450940 ASS1P00966 412 aaKnown RBP20.66■□□□□ 0.9
USP40-207ENST00000450940 PFKLP17858 780 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 ANXA13P27216 316 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 SOX9P48436 509 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 VAMP7P51809 220 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 MTAPQ13126 283 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 EDRF1Q3B7T1 1238 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 ITPRIPL2Q3MIP1 535 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 ZC3H14Q6PJT7 736 aaKnown RBP20.66■□□□□ 0.9
USP40-207ENST00000450940 TXNDC11Q6PKC3 985 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 INTS8Q75QN2 995 aaKnown RBP20.66■□□□□ 0.9
USP40-207ENST00000450940 RIN3Q8TB24 985 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 SLC22A12Q96S37 553 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 SDCBP2Q9H190 292 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 TMEM30AQ9NV96 361 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 EHD2Q9NZN4 543 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 ZNF292O60281 2723 aa20.66■□□□□ 0.9
USP40-207ENST00000450940 F8VP50 259 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 USP17L7P0C7H9 530 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 TCF3P15923 654 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 USP46P62068 366 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms