RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	ADH6	Q04894	360 aa	Known RBP	4.81	□□□□□ -1.64
RPN11	YFR004W	IRC25	Q07951	179 aa		4.81	□□□□□ -1.64
RPN11	YFR004W	FYV7	Q12247	151 aa		4.81	□□□□□ -1.64
RPN11	YFR004W	JID1	Q12350	301 aa		4.81	□□□□□ -1.64
RPN11	YFR004W	ATO3	Q12359	275 aa		4.81	□□□□□ -1.64
RPN11	YFR004W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.81	□□□□□ -1.64
RPN11	YFR004W	HMRA1	P0CY11	126 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	YJL213W	P40896	331 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	YJL028W	P47062	111 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	ATP19	P81451	68 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	GIM5	Q04493	163 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	NAT5	Q08689	176 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	AYT1	Q12226	474 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	YPR014C	Q6B0W2	109 aa		4.8	□□□□□ -1.64
RPN11	YFR004W	TIR1	P10863	254 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	ZRT1	P32804	376 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	GSP1	P32835	219 aa	Known RBP	4.79	□□□□□ -1.64
RPN11	YFR004W	GSP2	P32836	220 aa	Known RBP	4.79	□□□□□ -1.64
RPN11	YFR004W	TEM1	P38987	245 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	HST4	P53688	370 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	SAE3	P89114	91 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	MRX11	Q03079	207 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	MIX17	Q03667	156 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	IRC23	Q08416	157 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	CSM4	Q08955	156 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	FCY1	Q12178	158 aa		4.79	□□□□□ -1.64
RPN11	YFR004W	MRS1	P07266	363 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	ATP5	P09457	212 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	IES6	P32617	166 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	TIR2	P33890	251 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	RRT1	P38192	103 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	SNU13	P39990	126 aa	Known RBP	4.78	□□□□□ -1.64
RPN11	YFR004W	RPA43	P46669	326 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	YIP1	P53039	248 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	SDH7	Q04401	133 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	TPT1	Q12272	230 aa	Known RBP	4.78	□□□□□ -1.64
RPN11	YFR004W	WIP1	Q2V2P8	89 aa		4.78	□□□□□ -1.64
RPN11	YFR004W	RPL23A	P0CX41	137 aa	Known RBP	4.77	□□□□□ -1.65
RPN11	YFR004W	RPL23B	P0CX42	137 aa	Known RBP	4.77	□□□□□ -1.65
RPN11	YFR004W	YER190C-B	P0CX94	160 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YEL077W-A	P0CX95	160 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YGR296C-B	P0CX96	160 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YPL283W-B	P0CX97	160 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YPR204C-A	P0CX98	160 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	MIG1	P27705	504 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YPS1	P32329	569 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	PRY2	P36110	329 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	YMR141C	P40211	102 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	PRE5	P40302	234 aa	Known RBP	4.77	□□□□□ -1.65
RPN11	YFR004W	DAD4	P69851	72 aa		4.77	□□□□□ -1.65
RPN11	YFR004W	ARC18	Q05933	178 aa	Known RBP	4.77	□□□□□ -1.65
RPN11	YFR004W	HTB2	P02294	131 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	YHR213W	P0CI67	198 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	MRPL31	P14063	131 aa	Predicted RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	PAU16	P35994	123 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	MRPL38	P35996	138 aa	Predicted RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	GPI18	P38211	433 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	SEC72	P39742	193 aa	Known RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	YNL200C	P40165	246 aa	Known RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	GLC8	P41818	229 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	WWM1	P43582	211 aa	Known RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	YFR045W	P43617	309 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	MSC3	Q05812	728 aa		4.76	□□□□□ -1.65
RPN11	YFR004W	FSF1	Q12029	327 aa	Known RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.76	□□□□□ -1.65
RPN11	YFR004W	STF1	P01098	86 aa		4.75	□□□□□ -1.65
RPN11	YFR004W	YGR017W	P53210	297 aa		4.75	□□□□□ -1.65
RPN11	YFR004W	YGR035W-A	Q45U48	73 aa		4.75	□□□□□ -1.65
RPN11	YFR004W	SCS22	Q6Q595	175 aa		4.75	□□□□□ -1.65
RPN11	YFR004W	COX2	P00410	251 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	RPL31B	P0C2H9	113 aa	Known RBP	4.74	□□□□□ -1.65
RPN11	YFR004W	DDI2	P0CH63	225 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	DDI3	P0CH64	225 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	MBB1	P39534	108 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	YGL118C	P53132	145 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	PBP4	Q07362	185 aa	Known RBP	4.74	□□□□□ -1.65
RPN11	YFR004W	DAD1	Q12248	94 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	YIL002W-A	Q3E7Z5	69 aa		4.74	□□□□□ -1.65
RPN11	YFR004W	YFL068W	P0CX99	160 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	YLL066W-A	P0CY00	160 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	YLL067W-A	P0CY01	160 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	PAU7	P39545	55 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	GLE2	P40066	365 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	IMP2	P46972	177 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	YJL027C	P47063	138 aa	Predicted RBP	4.73	□□□□□ -1.65
RPN11	YFR004W	THG1	P53215	237 aa	Known RBP	4.73	□□□□□ -1.65
RPN11	YFR004W	SWT21	P53873	357 aa	Predicted RBP	4.73	□□□□□ -1.65
RPN11	YFR004W	CNL1	Q06333	122 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	SRL1	Q08673	210 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	TIM18	Q08749	192 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	YDL157C	Q12082	118 aa		4.73	□□□□□ -1.65
RPN11	YFR004W	CYC3	P06182	269 aa		4.72	□□□□□ -1.65
RPN11	YFR004W	HAC1	P41546	238 aa		4.72	□□□□□ -1.65
RPN11	YFR004W	YDL186W	P48568	277 aa		4.72	□□□□□ -1.65
RPN11	YFR004W	BRP1	P53194	125 aa		4.72	□□□□□ -1.65
RPN11	YFR004W	GTO3	Q04806	366 aa		4.72	□□□□□ -1.65
RPN11	YFR004W	PHO85	P17157	305 aa		4.71	□□□□□ -1.66
RPN11	YFR004W	MDM10	P18409	493 aa		4.71	□□□□□ -1.66
RPN11	YFR004W	RPL32	P38061	130 aa	Known RBP	4.71	□□□□□ -1.66
RPN11	YFR004W	AGE2	P40529	298 aa		4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 529 ms