RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 TRIM21P19474 475 aaKnown RBP21.61■■□□□ 1.05
PTCD3-220ENST00000627371 CYP2F1P24903 491 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 MAGEA11P43364 429 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 EPHB3P54753 998 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 YWHAEP62258 255 aaKnown RBP21.61■■□□□ 1.05
PTCD3-220ENST00000627371 GCNT1Q02742 428 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 ORC1Q13415 861 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 ARHGEF19Q8IW93 802 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 PPM1KQ8N3J5 372 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 UBR7Q8N806 425 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 ANKRD20A12PQ8NF67 263 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 DNAI2Q9GZS0 605 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 HCFC1R1Q9NWW0 138 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 DNMT3BQ9UBC3 853 aaKnown RBP21.61■■□□□ 1.05
PTCD3-220ENST00000627371 LIMA1Q9UHB6 759 aaKnown RBP21.61■■□□□ 1.05
PTCD3-220ENST00000627371 PATJQ8NI35 1801 aa21.61■■□□□ 1.05
PTCD3-220ENST00000627371 ZNF638Q14966 1978 aaKnown RBP21.61■■□□□ 1.05
PTCD3-220ENST00000627371 OBSL1O75147 1896 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 TPM2P07951 284 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 PTPN2P17706 415 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 SLC9A1P19634 815 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 IQCB1Q15051 598 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 IQCEQ6IPM2 695 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 PHLDB3Q6NSJ2 640 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 VSTM1Q6UX27 236 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 ADHFE1Q8IWW8 467 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 ZNF512Q96ME7 567 aaPredicted RBP21.6■■□□□ 1.05
PTCD3-220ENST00000627371 B3GNT5Q9BYG0 378 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 ELOVL4Q9GZR5 314 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 ASB3Q9Y575 518 aa21.6■■□□□ 1.05
PTCD3-220ENST00000627371 NCOR1O75376 2440 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 BECN2A8MW95 431 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 PES1O00541 588 aaKnown RBP21.59■■□□□ 1.05
PTCD3-220ENST00000627371 RHOP08100 348 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 CDK11BP21127 795 aaKnown RBP21.59■■□□□ 1.05
PTCD3-220ENST00000627371 BDNFP23560 247 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 PON1P27169 355 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 RPL10AP62906 217 aaKnown RBP21.59■■□□□ 1.05
PTCD3-220ENST00000627371 NTHL1P78549 312 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 ZP2Q05996 745 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 VEPH1Q14D04 833 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 PABPC1LQ4VXU2 614 aaKnown RBP21.59■■□□□ 1.05
PTCD3-220ENST00000627371 RRAGAQ7L523 313 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 ITIH5Q86UX2 942 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 ADAMTS19Q8TE59 1207 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 KAT5Q92993 513 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 PSMG2Q969U7 264 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 VPS16Q9H269 839 aa21.59■■□□□ 1.05
PTCD3-220ENST00000627371 AVENQ9NQS1 362 aaPredicted RBP21.59■■□□□ 1.05
PTCD3-220ENST00000627371 ATP8B3O60423 1300 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 GPR15P49685 360 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 COPB1P53618 953 aaKnown RBP21.58■■□□□ 1.05
PTCD3-220ENST00000627371 RAD23BP54727 409 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 ZNF394Q53GI3 561 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 FAM35AQ86V20 835 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 FUKQ8N0W3 1084 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 C12orf29Q8N999 325 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 LEMD2Q8NC56 503 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 FAM200AQ8TCP9 573 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 TMEM176AQ96HP8 235 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 FAM81BQ96LP2 452 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 KREMEN1Q96MU8 473 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 CORO1BQ9BR76 489 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 ZNF518BQ9C0D4 1074 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 CBX8Q9HC52 389 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 APEX2Q9UBZ4 518 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 USTQ9Y2C2 406 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 NR2E1Q9Y466 385 aa21.58■■□□□ 1.05
PTCD3-220ENST00000627371 LRRC10BA6NIK2 292 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 CLDN5O00501 218 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 TRIM66O15016 1216 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 ATP1A3P13637 1013 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 CCDC130P13994 396 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 ACO1P21399 889 aaKnown RBP21.57■■□□□ 1.04
PTCD3-220ENST00000627371 FSHRP23945 695 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 EPHA5P54756 1037 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 DDR2Q16832 855 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 PAQR9Q6ZVX9 377 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 ENOSF1Q7L5Y1 443 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 APTXQ7Z2E3 356 aaKnown RBP21.57■■□□□ 1.04
PTCD3-220ENST00000627371 DNAJB7Q7Z6W7 309 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-220ENST00000627371 SCN4BQ8IWT1 228 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 SLC4A11Q8NBS3 891 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 JAKMIP2Q96AA8 810 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 SMARCD1Q96GM5 515 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 MED10Q9BTT4 135 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 UBE2TQ9NPD8 197 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-220ENST00000627371 ASAH2Q9NR71 780 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 FAM49BQ9NUQ9 324 aa21.57■■□□□ 1.04
PTCD3-220ENST00000627371 C19orf67A6NJJ6 358 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 LOC730098B7Z3J9 87 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 GRIK1P39086 918 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 KCNMA1Q12791 1236 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 SLC5A9Q2M3M2 681 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 PRSS36Q5K4E3 855 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 FKBP15Q5T1M5 1219 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 SDHAF4Q5VUM1 108 aa21.56■■□□□ 1.04
PTCD3-220ENST00000627371 PDZD4Q76G19 769 aaPredicted RBP21.56■■□□□ 1.04
PTCD3-220ENST00000627371 GET4Q7L5D6 327 aaPredicted RBP21.56■■□□□ 1.04
PTCD3-220ENST00000627371 TMC8Q8IU68 726 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms