RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 COQ4Q9Y3A0 265 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MYBPHLA2RUH7 354 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 PMM2O15305 246 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 HCRTO43612 131 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 AFPP02771 609 aaKnown RBP13.84□□□□□ -0.19
CLK3-224ENST00000568605 LAMP2P13473 410 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 PTPN1P18031 435 aaKnown RBP13.84□□□□□ -0.19
CLK3-224ENST00000568605 TBXAS1P24557 533 aaPredicted RBP13.84□□□□□ -0.19
CLK3-224ENST00000568605 CDC25CP30307 473 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 INCA1Q0VD86 236 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 STX1AQ16623 288 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 CBWD6Q4V339 395 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 ARHGAP15Q53QZ3 475 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 CBWD3Q5JTY5 395 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 PRSS36Q5K4E3 855 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 CBWD5Q5RIA9 395 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 TRIM59Q8IWR1 403 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 NPAS3Q8IXF0 933 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 UBALD2Q8IYN6 164 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 ING5Q8WYH8 240 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 PCED1BQ96HM7 432 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 C1QTNF1Q9BXJ1 281 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 GPR88Q9GZN0 384 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 DNAJC25Q9H1X3 360 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 THAP9Q9H5L6 903 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 TMLHEQ9NVH6 421 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 LIMD1Q9UGP4 676 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 ZMYM5Q9UJ78 669 aa13.84□□□□□ -0.19
CLK3-224ENST00000568605 PI4K2BG5E9Z4 385 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 SOAT2O75908 522 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 CEBPBP17676 345 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 CYP2F1P24903 491 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 CDH8P55286 799 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 SLC5A9Q2M3M2 681 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 DNAJB7Q7Z6W7 309 aaPredicted RBP13.83□□□□□ -0.2
CLK3-224ENST00000568605 CREBRFQ8IUR6 639 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 SCN4BQ8IWT1 228 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 ITFG1Q8TB96 612 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 SMARCD1Q96GM5 515 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 NT5C1BQ96P26 610 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 LPIN3Q9BQK8 851 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 MED10Q9BTT4 135 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 NT5C1AQ9BXI3 368 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 DPEP3Q9H4B8 488 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 SLITRK6Q9H5Y7 841 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■■■■ 73.2
CLK3-224ENST00000568605 ANO10Q9NW15 660 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 COL4A2P08572 1712 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 TECTAO75443 2155 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 MUC3AQ02505 3323 aa13.83□□□□□ -0.2
CLK3-224ENST00000568605 ATP2C2O75185 946 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 PRKCSHP14314 528 aaPredicted RBP13.82□□□□□ -0.2
CLK3-224ENST00000568605 CD58P19256 250 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 BDNFP23560 247 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 GABRR2P28476 465 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 GRIK1P39086 918 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 MTIF2P46199 727 aaKnown RBP13.82□□□□□ -0.2
CLK3-224ENST00000568605 NDST1P52848 882 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 KCNH2Q12809 1159 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 TDGQ13569 410 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 HTR4Q13639 388 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 TMC8Q8IU68 726 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 HS6ST3Q8IZP7 471 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 SEMA4DQ92854 862 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 TRMT2BQ96GJ1 504 aaKnown RBP13.82□□□□□ -0.2
CLK3-224ENST00000568605 SDCBP2Q9H190 292 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 KCNK12Q9HB15 430 aa13.82□□□□□ -0.2
CLK3-224ENST00000568605 APOBEC3GQ9HC16 384 aaKnown RBP13.82□□□□□ -0.2
CLK3-224ENST00000568605 A0A1W2PRU2 124 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 CILPO75339 1184 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 NOL4O94818 638 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 ASGR2P07307 311 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 DDX6P26196 483 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLK3-224ENST00000568605 CDR1P51861 262 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 CUL2Q13617 745 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 MAN2A1Q16706 1144 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 CCDC142Q17RM4 750 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 DENND5BQ6ZUT9 1274 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 ACOT1Q86TX2 421 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 FAM35AQ86V20 835 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 SHKBP1Q8TBC3 707 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 GIPC2Q8TF65 315 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 ELMO3Q96BJ8 720 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 SPATA17Q96L03 361 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 C8orf48Q96LL4 319 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 ATXN3LQ9H3M9 355 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 DMAP1Q9NPF5 467 aaPredicted RBP13.81□□□□□ -0.2
CLK3-224ENST00000568605 KRT82Q9NSB4 513 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 GCNT4Q9P109 453 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 MAGED2Q9UNF1 606 aaPredicted RBP13.81□□□□□ -0.2
CLK3-224ENST00000568605 DUSP12Q9UNI6 340 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 NME7Q9Y5B8 376 aa13.81□□□□□ -0.2
CLK3-224ENST00000568605 SLC38A8A6NNN8 435 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 ANHXE9PGG2 379 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 TPM2P07951 284 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 CCR2P41597 374 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 ZXDAP98168 799 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 SIGLEC14Q08ET2 396 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 TEAD2Q15562 447 aa13.8□□□□□ -0.2
CLK3-224ENST00000568605 DDR2Q16832 855 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms