RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 THEM5Q8N1Q8 247 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 SLC4A11Q8NBS3 891 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 RIN3Q8TB24 985 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 SHKBP1Q8TBC3 707 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 ENOX1Q8TC92 643 aaKnown RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 TAF4BQ92750 862 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 RSPRY1Q96DX4 576 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 LRRC3BQ96PB8 259 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 SEPT5Q99719 369 aaPredicted RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 CRACR2AQ9BSW2 395 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 PLA2G2FQ9BZM2 168 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 NIF3L1Q9GZT8 377 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 EPHX3Q9H6B9 360 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 METTL14Q9HCE5 456 aaKnown RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 ACP6Q9NPH0 428 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 C11orf16Q9NQ32 467 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 FANCLQ9NW38 375 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 CDH9Q9ULB4 789 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 NFE2L3Q9Y4A8 694 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 ARIH1Q9Y4X5 557 aaPredicted RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 CACNA1AO00555 2505 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 SYCE3A1L190 88 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 FSD2A1L4K1 749 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 A8MXQ7 604 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 HHLA1C9JL84 531 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 PRRG1O14668 218 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 GABBR2O75899 941 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 FAM163BP0C2L3 166 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 SRGAP2BP0DMP2 458 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 ATP1A3P13637 1013 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 ZNF18P17022 549 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 FCARP24071 287 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 IQCB1Q15051 598 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 NFKBIBQ15653 356 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 MGAT5BQ3V5L5 792 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 ANO6Q4KMQ2 910 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 ZNF394Q53GI3 561 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 LIN9Q5TKA1 542 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 CCDC149Q6ZUS6 474 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 RRAGAQ7L523 313 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 GET4Q7L5D6 327 aaPredicted RBP9.83□□□□□ -0.84
VPS35-206ENST00000565228 GPRIN1Q7Z2K8 1008 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 DNAJB7Q7Z6W7 309 aaPredicted RBP9.83□□□□□ -0.84
VPS35-206ENST00000565228 RNF135Q8IUD6 432 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 NPAS3Q8IXF0 933 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 CRYBG2Q8N1P7 616 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 B3GALNT2Q8NCR0 500 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 EHBP1Q8NDI1 1231 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 MYCBPAPQ8TBZ2 947 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 SPATA18Q8TC71 538 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 TFAP2BQ92481 460 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 FGF13Q92913 245 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 KCNK16Q96T55 309 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 SMOQ99835 787 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 CORO1BQ9BR76 489 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 GPR88Q9GZN0 384 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 SNX25Q9H3E2 840 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 THAP9Q9H5L6 903 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 CISHQ9NSE2 258 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 FAM49BQ9NUQ9 324 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 LIMD1Q9UGP4 676 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 MUTYHQ9UIF7 546 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 PCDHB5Q9Y5E4 795 aa9.83□□□□□ -0.84
VPS35-206ENST00000565228 COL4A2P08572 1712 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 SLC38A8A6NNN8 435 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 BECN2A8MW95 431 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 KCNJ18B7U540 433 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 TULP2O00295 520 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 TNFRSF10BO14763 440 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 EPHB6O15197 1021 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 NARSO43776 548 aaKnown RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 AFPP02771 609 aaKnown RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 F11P03951 625 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 CFHP08603 1231 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PNMA6AP0CW24 399 aaPredicted RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 FSHRP23945 695 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PON1P27169 355 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 ELF1P32519 619 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 SSTR3P32745 418 aaPredicted RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 CYP4F8P98187 520 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PLD1Q13393 1074 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 CUL2Q13617 745 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 KCNJ12Q14500 433 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 KRT31Q15323 416 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 TEAD2Q15562 447 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 STX1AQ16623 288 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 CFAP221Q4G0U5 840 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PABPC1LQ4VXU2 614 aaKnown RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 CES5AQ6NT32 575 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PARM1Q6UWI2 310 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 FAM35AQ86V20 835 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 DCP1BQ8IZD4 617 aaKnown RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 SPPL2BQ8TCT7 592 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 FGF14Q92915 247 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PSMG2Q969U7 264 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 RIPOR3Q96MK2 946 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 SLC22A12Q96S37 553 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 OXCT2Q9BYC2 517 aaPredicted RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 INTS2Q9H0H0 1204 aaKnown RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 PIDD1Q9HB75 910 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms