RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 BRCC3P46736 316 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 KRT83P78385 493 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC26Q8TAB7 109 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 PANX2Q96RD6 677 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 WNT8AQ9H1J5 351 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 PTPRHQ9HD43 1115 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 ATP8A1Q9Y2Q0 1164 aa9.17□□□□□ -0.94
LIMCH1-209ENST00000509277 CEP104O60308 925 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 VNN1O95497 513 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 CLCNKBP51801 687 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 EPHB4P54760 987 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 PSMC1P62191 440 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SOX4Q06945 474 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 ZACNQ401N2 412 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 UBXN11Q5T124 520 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 ZFYVE27Q5T4F4 411 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 AGMOQ6ZNB7 445 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 WDR49Q8IV35 697 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC30A5Q8TAD4 765 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 TMC2Q8TDI7 906 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC20A1Q8WUM9 679 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SNRNP27Q8WVK2 155 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 ARMC5Q96C12 935 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 BORCS6Q96GS4 357 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 HEXIM2Q96MH2 286 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 ADAM33Q9BZ11 813 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 APOBEC3GQ9HC16 384 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 ERVK-5Q9HDB9 667 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 CEP72Q9P209 647 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 CAPN6Q9Y6Q1 641 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 LRRD1A4D1F6 860 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 RCCD1A6NED2 376 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 NOL4O94818 638 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 PIGRP01833 764 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 MAGEA1P43355 309 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 IKBKEQ14164 716 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 BZW1Q7L1Q6 419 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC47A2Q86VL8 602 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 C12orf56Q8IXR9 622 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 IFT20Q8IY31 132 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 SYNCQ9H7C4 482 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 NHEJ1Q9H9Q4 299 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 HYOU1Q9Y4L1 999 aa9.16□□□□□ -0.94
LIMCH1-209ENST00000509277 A0A1W2PQC6 194 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIM43BA6NCK2 446 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ABLIM1O14639 778 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 IL18RAPO95256 599 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 GLI1P08151 1106 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 RABGGTBP53611 331 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 SNRPFP62306 86 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 RBP5P82980 135 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIM14Q14142 442 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 SURF1Q15526 300 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 CCDC142Q17RM4 750 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 LRRC23Q53EV4 343 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 RASIP1Q5U651 963 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 PDXDC1Q6P996 788 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 RTN4RL1Q86UN2 441 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF280BQ86YH2 543 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 TNS4Q8IZW8 715 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 AGAP11Q8TF27 550 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIM43Q96BQ3 446 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 PGBD4Q96DM1 585 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 YME1L1Q96TA2 773 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 CERS4Q9HA82 394 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 PAPOLBQ9NRJ5 636 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 DNAJC17Q9NVM6 304 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 CAPN11Q9UMQ6 739 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 A8MXQ7 604 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 PPFIA2O75334 1257 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 C4BPAP04003 597 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ADORA2BP29275 332 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 GJC1P36383 396 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 FNTAP49354 379 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ZNF449Q6P9G9 518 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 SLC24A5Q71RS6 500 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ACOT1Q86TX2 421 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ECHDC2Q86YB7 292 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 ARFGAP2Q8N6H7 521 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 URGCPQ8TCY9 931 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 FBXL18Q96ME1 805 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 PIDD1Q9HB75 910 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 DNAJB4Q9UDY4 337 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 TRIM33Q9UPN9 1127 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 THSD7BQ9C0I4 1608 aa9.15□□□□□ -0.94
LIMCH1-209ENST00000509277 KCNK3O14649 394 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 KIAA0391O15091 583 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 ATMINO43313 823 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 XPOTO43592 962 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 HUS1O60921 280 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 AXLP30530 894 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 KCNJ2P63252 427 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 DEFB103AP81534 67 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 PTK2Q05397 1052 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 MYBPC2Q14324 1141 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM187BQ17R55 369 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 TRIM71Q2Q1W2 868 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 WDR93Q6P2C0 686 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 VPS36Q86VN1 386 aa9.15□□□□□ -0.95
LIMCH1-209ENST00000509277 GDAP1Q8TB36 358 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms