RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ENKURQ8TC29 256 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 LRRC20Q8TCA0 184 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 AGBL1Q96MI9 1066 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 CNPY3Q9BT09 278 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 EHD4Q9H223 541 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 LRMDAQ9H2I8 198 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 PCDH18Q9HCL0 1135 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 TRIM10Q9UDY6 481 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 E9PCH4 1651 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 KANSL1LA0AUZ9 987 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 SLC25A27O95847 323 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 THRAP10827 490 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ALOX12P18054 663 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 PHKA2P46019 1235 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 RALGDSQ12967 914 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 SPDYCQ5MJ68 293 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 LRRC49Q8IUZ0 686 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 MARCH10Q8NA82 808 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 SYTL5Q8TDW5 730 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 SCFD1Q8WVM8 642 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ATP6V1E2Q96A05 226 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 E2F7Q96AV8 911 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 KLHL32Q96NJ5 620 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 VPS11Q9H270 941 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 KIAA1586Q9HCI6 787 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 BARX2Q9UMQ3 279 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 ZNF157P51786 506 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 PURAQ00577 322 aaKnown RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 TRIM71Q2Q1W2 868 aaKnown RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 BNC2Q6ZN30 1099 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP40-208ENST00000450966 DENND6AQ8IWF6 608 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 THEM5Q8N1Q8 247 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 DHX38Q92620 1227 aaKnown RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 KAT2BQ92831 832 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 KCNQ2O43526 872 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ZNF862O60290 1169 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 YWHAHQ04917 246 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 SLC12A1Q13621 1099 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 ZC2HC1CQ53FD0 456 aaPredicted RBP13.82□□□□□ -0.2
USP40-208ENST00000450966 NEK10Q6ZWH5 1172 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 C7orf31Q8N865 590 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 OR6Y1Q8NGX8 325 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 SLC12A4Q9UP95 1085 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 CDY2AQ9Y6F7 541 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 CDY1Q9Y6F8 540 aa13.82□□□□□ -0.2
USP40-208ENST00000450966 SH2B2O14492 632 aaPredicted RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 ZBTB5O15062 677 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 GAS2O43903 313 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 TRMUO75648 421 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 FCGR1AP12314 374 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 ARL4AP40617 200 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 TP53BP2Q13625 1128 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 LLGL1Q15334 1064 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 CCSAPQ6IQ19 270 aaPredicted RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 RBM43Q6ZSC3 357 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 PIGSQ96S52 555 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 OSBPL6Q9BZF3 934 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 ZNF221Q9UK13 617 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 CCDC182A6NF36 153 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 MGRN1O60291 552 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 CYP21A2P08686 494 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 SARSP49591 514 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 CDK7P50613 346 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 BFSP2Q13515 415 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 RASA2Q15283 850 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 HIF1AQ16665 826 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 Q3C1V9 767 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 KLHL17Q6TDP4 642 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 NET1Q7Z628 596 aaPredicted RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 LRRC4Q9HBW1 653 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 PRAMEF22A3QJZ6 481 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 KCNJ2P63252 427 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 RNF43Q68DV7 783 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 TBC1D16Q8TBP0 767 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 RBM15Q96T37 977 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP40-208ENST00000450966 PREBQ9HCU5 417 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 TOMM70O94826 608 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 ALDH1A1P00352 501 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 RPLP2P05387 115 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 S100A6P06703 90 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 CCR3P51677 355 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 GPS1Q13098 491 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 SLC18A3Q16572 532 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 SLC10A5Q5PT55 438 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 SNRNP48Q6IEG0 339 aaKnown RBP13.81□□□□□ -0.2
USP40-208ENST00000450966 TAF2Q6P1X5 1199 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 C16orf62Q7Z3J2 963 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 ZNF34Q8IZ26 560 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 UBASH3BQ8TF42 649 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 MYLK2Q9H1R3 596 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 GDAQ9Y2T3 454 aa13.81□□□□□ -0.2
USP40-208ENST00000450966 ITGA2BP08514 1039 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 ZNF200P98182 395 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 PERM1Q5SV97 790 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 CELF1Q92879 486 aaKnown RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 PRDM16Q9HAZ2 1276 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 EPB41L4AQ9HCS5 686 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 SNX13Q9Y5W8 968 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 A0A1W2PQJ5 194 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms