RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MCCD1P59942 119 aaPredicted RBP13.88□□□□□ -0.19
CLK3-224ENST00000568605 CFAP221Q4G0U5 840 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 CYP4A22Q5TCH4 519 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 TTC39CQ8N584 583 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 ATAD1Q8NBU5 361 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 GPT2Q8TD30 523 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 TAS1R2Q8TE23 839 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 FAXDC2Q96IV6 333 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 TNIP3Q96KP6 325 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 CORO1BQ9BR76 489 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 NIF3L1Q9GZT8 377 aa13.88□□□□□ -0.19
CLK3-224ENST00000568605 MRPS23Q9Y3D9 190 aaKnown RBP13.88□□□□□ -0.19
CLK3-224ENST00000568605 A8MXQ7 604 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 DCXO43602 365 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 VNN2O95498 520 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 RHOP08100 348 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 PTMSP20962 102 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 RPL10AP62906 217 aaKnown RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 CT47A1Q5JQC4 288 aaPredicted RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 WDR44Q5JSH3 913 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 CCDC183Q5T5S1 534 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 SCARA3Q6AZY7 606 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 MTSS1LQ765P7 747 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 FAM114A1Q8IWE2 563 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 SLC35C1Q96A29 364 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 GCNAQ96QF7 691 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 DUSP9Q99956 384 aaKnown RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 MRPL45Q9BRJ2 306 aaKnown RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 FAM124BQ9H5Z6 455 aaPredicted RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 SMYD3Q9H7B4 428 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 CD320Q9NPF0 282 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 HCFC1R1Q9NWW0 138 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 RAB20Q9NX57 234 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 IGSF9Q9P2J2 1179 aa13.87□□□□□ -0.19
CLK3-224ENST00000568605 DNMT3BQ9UBC3 853 aaKnown RBP13.87□□□□□ -0.19
CLK3-224ENST00000568605 HAPLN1P10915 354 aaPredicted RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 ANXA13P27216 316 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 ERCC5P28715 1186 aaPredicted RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 RAP1GAPP47736 663 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 MARSP56192 900 aaKnown RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 PSMC1P62191 440 aaKnown RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 CYP27A1Q02318 531 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 MTMR3Q13615 1198 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 DPCR1Q3MIW9 517 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 VSTM1Q6UX27 236 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 UNC93AQ86WB7 457 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 B3GALNT2Q8NCR0 500 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 FEZF2Q8TBJ5 459 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 MYCBPAPQ8TBZ2 947 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 PSMG2Q969U7 264 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 NXPE3Q969Y0 559 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 MYLPFQ96A32 169 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 PI4K2AQ9BTU6 479 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 SRRTQ9BXP5 876 aaKnown RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 ELOVL4Q9GZR5 314 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 CRISPLD1Q9H336 500 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 CYP3A43Q9HB55 503 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 EPS15L1Q9UBC2 864 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 MAGEC2Q9UBF1 373 aaPredicted RBP13.86□□□□□ -0.19
CLK3-224ENST00000568605 MUTYHQ9UIF7 546 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 GTF3C4Q9UKN8 822 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 CDH7Q9ULB5 785 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 SORCS3Q9UPU3 1222 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 SLC27A5Q9Y2P5 690 aa13.86□□□□□ -0.19
CLK3-224ENST00000568605 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLK3-224ENST00000568605 KMT2EQ8IZD2 1858 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 TRIM66O15016 1216 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 P4HA2O15460 535 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MICAL2O94851 1124 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 PDGFRBP09619 1106 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 CSH1P0DML2 217 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 CSH2P0DML3 217 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MYL4P12829 197 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 ATF6P18850 670 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 LMO2P25791 158 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MAGEA11P43364 429 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 ASPAP45381 313 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 FMO5P49326 533 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 EPHA5P54756 1037 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 YWHAEP62258 255 aaKnown RBP13.85□□□□□ -0.19
CLK3-224ENST00000568605 NTHL1P78549 312 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 PTPN21Q16825 1174 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MDH1BQ5I0G3 518 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 SPOPLQ6IQ16 392 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 FAM171BQ6P995 826 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 SASS6Q6UVJ0 657 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 RBM43Q6ZSC3 357 aaKnown RBP13.85□□□□□ -0.19
CLK3-224ENST00000568605 LRRTM3Q86VH5 581 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 TTC9BQ8N6N2 239 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 FGF13Q92913 245 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 CNOT6LQ96LI5 555 aaKnown RBP13.85□□□□□ -0.19
CLK3-224ENST00000568605 CEP295NLQ96MC4 621 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 MYADMQ96S97 322 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 PKMYT1Q99640 499 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 BCO2Q9BYV7 579 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 CRTAC1Q9NQ79 661 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 GDE1Q9NZC3 331 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 EHD2Q9NZN4 543 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 CEP72Q9P209 647 aa13.85□□□□□ -0.19
CLK3-224ENST00000568605 UXTQ9UBK9 157 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms